| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,700,892 – 18,700,987 |
| Length | 95 |
| Max. P | 0.792418 |
| Location | 18,700,892 – 18,700,987 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.11 |
| Shannon entropy | 0.34896 |
| G+C content | 0.39189 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -14.39 |
| Energy contribution | -15.67 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18700892 95 - 27905053 AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. ( -21.80, z-score = -1.95, R) >droSim1.chr3R 18515979 95 - 27517382 AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. ( -21.80, z-score = -1.95, R) >droSec1.super_0 19069941 95 - 21120651 AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. ( -21.80, z-score = -1.95, R) >droYak2.chr3R 19558100 95 - 28832112 AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. ( -21.80, z-score = -1.95, R) >droEre2.scaffold_4820 1105127 95 + 10470090 AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. ( -21.80, z-score = -1.95, R) >droAna3.scaffold_13340 11080397 74 + 23697760 --------AGGGCUCCUAUAAAUCACUGCCAAC-UAAAGUAUGUAGUUGUUCCUCGCUUAGUUAUAUCUAAAAUCAGAAAUUC------------ --------.((((..(((((....(((......-...))).)))))..)))).....((((......))))............------------ ( -6.60, z-score = 0.96, R) >consensus AAAUAAGCCGGCAGCGCAUAAAUCACUGCCAUCGGGAAUUAUUCAAUUUCAUCUCGUUUAGUAACAUCAAAAAGCGCUGCCAUGUUGACAAAAUG .........((((((((.................((((((....)))))).....(((....)))........)))))))).............. (-14.39 = -15.67 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:20 2011