| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,688,174 – 18,688,273 |
| Length | 99 |
| Max. P | 0.598475 |
| Location | 18,688,174 – 18,688,273 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.92 |
| Shannon entropy | 0.53664 |
| G+C content | 0.38307 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -8.42 |
| Energy contribution | -8.38 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18688174 99 - 27905053 UUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUCUGGGUCUGCCCGAAAAACCA----- .........((.((((((((((((.((((.-...))))))))..(((((....)))))............))))))))))((((....))))........----- ( -24.90, z-score = -2.44, R) >droAna3.scaffold_13340 11068734 94 + 23697760 CUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAACUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUCUGGGUCUGGCCGAAA---------- ..((((((.((.((((((((.(((..(((.-...)))..)))..(((((....)))))............)))))))))).))...)))).....---------- ( -22.80, z-score = -1.99, R) >droEre2.scaffold_4820 1091910 96 + 10470090 UUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCCGAAAAG-------- ..((((((..(.((((((((((((.((((.-...))))))))..(((((....)))))............)))))))).)..)))..))).......-------- ( -28.30, z-score = -3.17, R) >droYak2.chr3R 19543552 96 - 28832112 UUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCCGAAAAA-------- ..((((((..(.((((((((((((.((((.-...))))))))..(((((....)))))............)))))))).)..)))..))).......-------- ( -28.30, z-score = -3.21, R) >droSec1.super_0 19049502 99 - 21120651 UUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCUGAAAUACGA----- ..((((((..(.((((((((((((.((((.-...))))))))..(((((....)))))............)))))))).)..)))..)))..........----- ( -28.70, z-score = -3.15, R) >droSim1.chr3R 18502939 99 - 27517382 UUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCUGAAAUACGA----- ..((((((..(.((((((((((((.((((.-...))))))))..(((((....)))))............)))))))).)..)))..)))..........----- ( -28.70, z-score = -3.15, R) >droWil1.scaffold_181089 11028228 103 + 12369635 -UGCUACUUGACGACGCAUAAAAAUCUUCG-CACGAACUUUUUAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGUUUCGCACUCAGUCUCCAAGUGGUUGACCAA -.((((((((..(((...((((((..(((.-...))).))))))(((((....))))).......(((...(((.....)))))))))..))))))))....... ( -21.40, z-score = -1.35, R) >droPer1.super_145 53793 82 + 90410 GUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCUUCCGAAA---------------------- ............((.(((((((((.((((.-...))))))))..(((((....)))))............))))).)).....---------------------- ( -13.40, z-score = -0.16, R) >droVir3.scaffold_12822 3909734 97 + 4096053 UAGCCACUUGACAACGGAUGCAUUUUUUCGCUGAAGGCUUUAUUGCAACAAGAACUGCAAUAAAUUGAAAUGUCUGU--GAGUGCUUCACUAAAAACUA------ .(((.((((....((((..(((((((...((.....))(((((((((........)))))))))..)))))))))))--))))))).............------ ( -19.90, z-score = -0.74, R) >droGri2.scaffold_15074 3490782 93 - 7742996 UUGCCACUUGACAACGCAUACAAUUUUUUGCCACGAACUUUGU-GCAAUAAAAAUUGCAAUAAAUUGAAUUGCGAAAUGCGUUUCGCUGUCUGC----------- .........((((((((((....(((.((((.((((...))))-)))).)))..(((((((.......))))))).)))))).....))))...----------- ( -19.70, z-score = -0.69, R) >dp4.Unknown_group_393 9351 77 - 24651 GUGCCACUUGACGACGCAUAAAAAUCUUCG-CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCUUC--------------------------- ((((...........))))..........(-((((.(((((...(((((....)))))...)))))....)))))...--------------------------- ( -12.60, z-score = -0.12, R) >consensus UUGCCACUUGACGACGCAUAAAAAUCUUCG_CACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUCUGGGUCUGGCCGAAA__________ ............((.(((((......((((...)))).......(((((....)))))............))))).))........................... ( -8.42 = -8.38 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:17 2011