| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,677,033 – 18,677,132 |
| Length | 99 |
| Max. P | 0.994047 |
| Location | 18,677,033 – 18,677,132 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 70.04 |
| Shannon entropy | 0.54060 |
| G+C content | 0.46993 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.994047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18677033 99 + 27905053 AUUUCGCCUCCAUGUCUCGCACGUUCGCCGGCUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGU-CGGUCCAGGGUAGUUCCUUCUAAGGUCCUUUUUUU .....((((...((.((.((((((.....((((((((........)))))))).)))))).)).-)).....))))((..(((....)))..))...... ( -25.30, z-score = -2.72, R) >droSim1.chr3R 18491765 99 + 27517382 AUUUCGCCUCCAUGUCUCGCACGUUCGCCGGCUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGU-CGGUCCAGGAUAGUUCCUUCUAAGGUCCUUUUUUU .............(.((.((((((.....((((((((........)))))))).)))))).)).-)((.((((((....)))).....)).))....... ( -25.70, z-score = -3.00, R) >droEre2.scaffold_4820 1080794 98 - 10470090 AUUUUGCCUCCAUGUCUCGCACGUUCGCCGGCUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGU-CGGUCCAGGACAGUUCCUUCUAAGGUCCUUUUUU- .............(.((.((((((.....((((((((........)))))))).)))))).)).-)((.((((((....)))).....)).))......- ( -24.80, z-score = -2.47, R) >droAna3.scaffold_13340 11058378 95 - 23697760 GGCUCGCCUUCGUGUCUCGCACGUUC-CCGACUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGU-CGGUCUGGGGUAGUAGCUUCCAAAGUUUUCGU--- (((((((((..(((.((.((((((..-..((((((((........)))))))).)))))).)).-))..)..)))).).))))..............--- ( -26.70, z-score = -1.67, R) >droGri2.scaffold_15074 3480251 81 + 7742996 --------GUUGCCGCUUGCACGUUUCCAUGUUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGCCUGGAUCAGGUCUGCACUUUUUGUG----------- --------..(((.(((.((((((.......((((((........))))))...)))))).)))(((...)))....))).........----------- ( -17.20, z-score = 0.19, R) >droVir3.scaffold_12822 3902079 78 - 4096053 --------GUUGCAGCCCGCACGUUUUCAUUCUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGC-UGCUUCAGGACAG--CUUUUUGUG----------- --------...(((((..((((((.......((((((........))))))...))))))..))-)))......((((--....)))).----------- ( -23.60, z-score = -2.85, R) >consensus AUUUCGCCUCCAUGUCUCGCACGUUCGCCGGCUGCGUUUAUAUUUAUGCAGUUUACGUGUCAGU_CGGUCCAGGACAGUUCCUUCUAAGGUCCUUUU___ ...............((.((((((.....((((((((........)))))))).)))))).))........((((....))))................. (-14.30 = -14.63 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:16 2011