| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,676,305 – 18,676,413 |
| Length | 108 |
| Max. P | 0.884756 |
| Location | 18,676,305 – 18,676,413 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 89.82 |
| Shannon entropy | 0.18917 |
| G+C content | 0.44609 |
| Mean single sequence MFE | -35.33 |
| Consensus MFE | -27.15 |
| Energy contribution | -26.52 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18676305 108 - 27905053 UGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACA-UUUUCGGGGCGUGCCGAAGGCAAAAAGAA--------ACUAUGUUUGUAUAUUGCAAUAUU (((((.((.((((..((((((((.(((...-.))).)))((((((((......)))-))))).)))))...)))).))....(.((--------((...)))).)...)))))..... ( -32.60, z-score = -1.83, R) >droSim1.chr3R 18491057 108 - 27517382 UGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACA-UUUUCGGGGCGUGCCAAAGGCGAAAAGGA--------ACUAUGUUUGUAUAUUGCAAUAUU .(((.(((.....(((((((..((((...(-((.(...(((((((((......)))-)))))).).))))))).))))))).....--------))).)))((((.....)))).... ( -35.20, z-score = -2.46, R) >droSec1.super_0 19037724 108 - 21120651 UGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACA-UUUUCGGGGCGUGCCGAAGGCGAAAAGGA--------ACUUUGUUUGUAUAUUGCAAUAUU .(((((((.....(((((((..((((...(-((.(...(((((((((......)))-)))))).).))))))).))))))).....--------)))))))((((.....)))).... ( -38.00, z-score = -3.16, R) >droYak2.chr3R 19531445 117 - 28832112 UGCAAAGUGUUUGUUCGCCUGCUGGCCGAACCGGCAAGUGAGAAUGUGAAAUGACA-UUUUCGGGGCGUGCCGAAGGCAAAAAAAAAGAAAUGUACUAUGUUUGUAUAUUGCAAUAUU (((...((.((((..((((((((((.....)))))...(((((((((......)))-)))))))))))...)))).))...........(((((((.......))))))))))..... ( -36.60, z-score = -2.79, R) >droEre2.scaffold_4820 1080037 107 + 10470090 UGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACA-UUUUCGGGGCGUGCCGCAGGC-AAAAGGA--------ACUAUGCUUGUAUAUUGCAAUAUU ((((((((((..((((((((((.(((...(-((.(...(((((((((......)))-)))))).).))))))))))))-.....))--------)).)))))......)))))..... ( -36.20, z-score = -1.94, R) >droAna3.scaffold_13340 11057711 105 + 23697760 UGCAAAGUGUUUGUUCGCCUGUUGGCCGC--UGGCAAACGAGAAUGUGAAAUGACAUUUUUUGGGGUGUGCCGAAGGCAGCAA-----------ACUCUGUUUGUGUACUGCAAUAUU ((((.((.(((((((.((((.((((((((--(..((...((((((((......)))))))))).)))).))))))))))))))-----------)).))((......))))))..... ( -33.40, z-score = -1.39, R) >consensus UGCAAAGUGUUUGUUCGCCUGCUGGCCGAA_CGGCAAGUGAGAAUGUGAAAUGACA_UUUUCGGGGCGUGCCGAAGGCAAAAAGGA________ACUAUGUUUGUAUAUUGCAAUAUU (((((.((.((((..((((((((.((((...)))).)))((((((((......))).))))).)))))...)))).))................((.......))...)))))..... (-27.15 = -26.52 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:15 2011