| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,325,388 – 8,325,480 |
| Length | 92 |
| Max. P | 0.889596 |
| Location | 8,325,388 – 8,325,480 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 65.92 |
| Shannon entropy | 0.61705 |
| G+C content | 0.51981 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -13.31 |
| Energy contribution | -16.70 |
| Covariance contribution | 3.39 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8325388 92 - 23011544 -------GAAAGCUUCGCUGCC-A-AAGCUCCCUUGCUGCAAGCU-AAAAACUGAAUCC------GAGUUUUAGGCUGGGAUUGGGUCUUUCUCCCAGCAACCACUAA -------...(((((.......-.-)))))...((((((..((..-(((.(((.(((((------.(((.....))).))))).))).)))))..))))))....... ( -24.20, z-score = -0.17, R) >droSim1.chr2L 8113111 93 - 22036055 -------GAAAGCUUGGCGGCCAA-AAGCUCUCUGGCUGCAAGCU-AAAAACUGAAACC------GAGUUUCAGGCUGGGAUUGGGUCUUCCUCCCAGCGACCACUAA -------...((((((.((((((.-........))))))))))))-.....(((((((.------..)))))))(((((((..((.....)))))))))......... ( -37.70, z-score = -3.09, R) >droSec1.super_3 3821300 93 - 7220098 -------GAAAGCUUCGCGGCCAA-AAGCUCUCUGGCUGCAAGCU-AAAAACUGAAUCC------GAGUUUCAGGCUGGGAUUGGGUCUUCCUCCCAGCGACCACUAA -------...(((((.(((((((.-........))))))))))))-.....(((((...------....)))))(((((((..((.....)))))))))......... ( -35.50, z-score = -2.79, R) >droYak2.chr2L 10963144 71 - 22324452 -------GAAAGCUUGGCGGCC-A-AAGCUCCCUGGCUGCAAGCUAAAAAACUGAAUCU------GAGUUUCAGGCCGGGAUUGGG---------------------- -------...((((((.(((((-(-........))))))))))))......((.(((((------..((.....))..))))).))---------------------- ( -23.60, z-score = -0.72, R) >droEre2.scaffold_4929 17234867 90 - 26641161 -------GAAAGCUUCGCGGCC-A-AAGCUCCCUGGCUGCAAGCU--AAAACUGAAUCC------GAGUUUCAGGCUGGGAUUGGGCC-UCCUCCCAGCAACCAGCGA -------...(((((.((((((-(-........))))))))))))--....(((((...------....)))))(((((..(((((..-....)))))...))))).. ( -37.50, z-score = -2.31, R) >droVir3.scaffold_12875 5489400 108 - 20611582 GUUGGUUGUAGCCUGUACAAGUAAUAAUCAUAGCAACAACAACGGCAACAGCCCAACGCCAUUGAAAGUUUUUGCAUGAGCUUCAGCAACAGCAGCAGCUGCCACUAC ..((((.(((((((((...........((((.((((.(((...(((....)))(((.....)))...))).))))))))((....))....))))..))))).)))). ( -26.80, z-score = -0.35, R) >consensus _______GAAAGCUUCGCGGCC_A_AAGCUCCCUGGCUGCAAGCU_AAAAACUGAAUCC______GAGUUUCAGGCUGGGAUUGGGUCUUCCUCCCAGCAACCACUAA ..........(((((.((((((............)))))))))))......(((((.............)))))(((((((...........)))))))......... (-13.31 = -16.70 + 3.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:44 2011