| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,597,942 – 18,598,053 |
| Length | 111 |
| Max. P | 0.659165 |
| Location | 18,597,942 – 18,598,053 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.31 |
| Shannon entropy | 0.59908 |
| G+C content | 0.32465 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -7.25 |
| Energy contribution | -8.12 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18597942 111 + 27905053 AGGGUAUCCAUAUUUCGUUUGUAGUUUUAGCCUAAAGCGAAACGACUAAGGGGUAUAUAACUUGUUUGC----UUCCACAAACUAUUGAUAUCAAUUGUAUUUAAUUGCAAUUGA ...((((((.....((((((...((((((...)))))).)))))).....)))))).......(((((.----.....)))))........(((((((((......))))))))) ( -25.40, z-score = -1.82, R) >droSim1.chr3R_random 928040 97 + 1307089 AGAGUAUCACUAUUACGUUUGUAGUUUUAGCCUCAAGCGA---GACUAUAGGGUAUAUCA-------------UAUCAUAUA-UAUUGAUAUCAAUUGUAAUUAAGUGCAAUGA- .(((((((.((((..((((((..((....))..)))))).---....))))))))).))(-------------(((((....-...))))))..((((((......))))))..- ( -19.30, z-score = -0.87, R) >droYak2.chr3R 19447953 98 + 28832112 CGGGCAUCACAAUUUCGUUUAUUGGUUUACCAACAAACGAGUCGACUAGAAUGUACAUAUAUCAUUUCUUUGACUCUACACACUAUUGAUG-CAAUUGA---------------- ...((((((.......((((.((((....)))).))))(((((((...(((((.........)))))..)))))))..........)))))-)......---------------- ( -25.40, z-score = -4.06, R) >droEre2.scaffold_4820 994350 110 - 10470090 AGGGUAUCUAAAUUUCGUUUAUUGGUUUACCAUCAAACGAGUCGACUAGAAUAUACAUAACUUGUUGC-----CUCCACACACUAUUGAUUUCAAUUAUUGUUUAUUGCAAUUGA .(((((((((...(((((((..(((....)))..))))))).....))))....(((.....))))))-----))..........(..(((.((((........)))).)))..) ( -18.80, z-score = -0.64, R) >consensus AGGGUAUCAAAAUUUCGUUUAUAGGUUUACCAUCAAACGAGUCGACUAGAAGGUACAUAACUUGUUUC_____CUCCACACACUAUUGAUAUCAAUUGUA_UUAAUUGCAAUUG_ ..((((((.....(((((((..(((....)))..)))))))...((......)).................................))))))...................... ( -7.25 = -8.12 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:58 2011