| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,597,780 – 18,597,836 |
| Length | 56 |
| Max. P | 0.624533 |
| Location | 18,597,780 – 18,597,836 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 78.85 |
| Shannon entropy | 0.36770 |
| G+C content | 0.49974 |
| Mean single sequence MFE | -13.28 |
| Consensus MFE | -8.86 |
| Energy contribution | -9.90 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18597780 56 + 27905053 GCAAUGAGAAGUGCGACAAAGCUCACUUCUUGGUAAUUGCCACCCUCGAAUGGCAC .....((((((((.(......).))))))))......(((((........))))). ( -15.00, z-score = -1.62, R) >droAna3.scaffold_13340 10978446 54 - 23697760 --UCUGAUUACAUUGAUAAACCGUUUUUCCUGGUAAGCUCCGCCCUCGGAUGGCAC --.................((((.......))))..((((((....))))..)).. ( -6.80, z-score = 1.08, R) >droEre2.scaffold_4820 994171 54 - 10470090 --GCCAAUAAGUGCGACAAACAUCACUUCUUGGUAAUUGCCACCCUCGAAUGGCAC --(((((.(((((..........))))).)))))...(((((........))))). ( -14.20, z-score = -2.64, R) >droYak2.chr3R 19447780 56 + 28832112 GCAACGAGAAGUGCGACAAACAUCACUUCUUGGUAAUUGCCGCCCUCGAAUGGCAC (((((((((((((..........)))))))))....)))).(((.......))).. ( -15.20, z-score = -1.80, R) >droSec1.super_0 18958785 56 + 21120651 GCGAUGAGAAGUGCGACAAACCUCACUUCUUGGUAAUUGCCACCCUCGAAUGGCAC .....((((((((.(......).))))))))......(((((........))))). ( -15.20, z-score = -2.11, R) >consensus GCAAUGAGAAGUGCGACAAACCUCACUUCUUGGUAAUUGCCACCCUCGAAUGGCAC ....(((((((((.(......).))))))))).....(((((........))))). ( -8.86 = -9.90 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:57 2011