| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,595,200 – 18,595,291 |
| Length | 91 |
| Max. P | 0.978313 |
| Location | 18,595,200 – 18,595,291 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.28 |
| Shannon entropy | 0.62226 |
| G+C content | 0.47948 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -17.56 |
| Energy contribution | -17.73 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18595200 91 - 27905053 GGCUGGAUCGCCGUUGUAAAUGC---UGGUGGUCUAAGCCAACUCU-----------------------UCUUCCAAUGAAAACUACGAACAGCCCUCGUCUAAGCAGGUGUCGCAC--- ((((((((((((((.......))---.)))))))).))))......-----------------------.................(((...(((..(......)..))).)))...--- ( -23.60, z-score = -0.58, R) >droSim1.chr3R 18407077 113 - 27517382 GGCUGGAUCGCCGUUGUAAAUGC---UGGUGGUCUAAGCCAACUCUUUCUAACGGCAUCUAAUAGACCAUCUGCCAAU-AAAACUACGAACAGCCUUCAUCUAACCAGGUAUUAAAC--- (((((..(((..(((......((---.(((((((((.(((.............)))......))))))))).))....-..)))..))).)))))...((((....)))).......--- ( -30.22, z-score = -2.72, R) >droSec1.super_0 18956213 114 - 21120651 GGCUGGAUCGCCGUUGUAAAUGC---UGGUGGUCUAAGCCAACUCUUUCUAAUGGCAUCUAAUAGACCAUCUUCCAAUGAAAACUACGAACAGCCUUCGUCUAAGCAGGUAUUAAAC--- (((((..(((..(((.....((.---.(((((((((.((((...........))))......)))))))))...)).....)))..))).)))))......................--- ( -28.10, z-score = -1.52, R) >droYak2.chr3R 19444813 120 - 28832112 GGCUGGAUCGCCGUUGUAAAUGCUAGUGGUGGUCUAAGCCAACUCUUCCUAACGGCCUCAAAUAGACCAUCUUCCAAUGAUAACUAUGAGCCGCCUUCGUCCAAGCAGGCAACAUCGAGA (((((((((((((..((....))...))))))))).))))..(((........(((.(((..(((...(((.......)))..)))))))))((((.(......).))))......))). ( -36.00, z-score = -1.90, R) >droEre2.scaffold_4820 990784 117 + 10470090 GGCUGGAUCGCCGUUGUAAAUGC---UGGUGGUCUAAGCCAACUUUUCCUAACGGCAUCAAAUAGACCAUCUUCCAAUGAAAACUAUGAUCAGCCUUCGUCUAAGCAGGCCAUAUCGACC (((((.((((..(((.....((.---.(((((((((.(((.............)))......)))))))))...)).....)))..)))))))))...((((....)))).......... ( -28.82, z-score = -0.90, R) >droAna3.scaffold_13340 10975879 108 + 23697760 GGCUGGGUUUCCACUGGCCACUC---GGUUUUCUUUGGCUUGAGGUUCUCAAAUCCCUGGAGUAG------UUCUGAAGUAAGUCAAGAACCACUGCCCGAAAACCCGCCAAAACAC--- (((..(.......)..)))....---(((((((...((((((((...)))))........(((.(------((((((......)).))))).)))))).)))))))...........--- ( -30.60, z-score = -0.34, R) >consensus GGCUGGAUCGCCGUUGUAAAUGC___UGGUGGUCUAAGCCAACUCUUCCUAACGGCAUCAAAUAGACCAUCUUCCAAUGAAAACUACGAACAGCCUUCGUCUAAGCAGGCAAUAAAC___ (((((((((((((..((....))...))))))))).))))....................................................((((.(......).)))).......... (-17.56 = -17.73 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:56 2011