| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,528,210 – 18,528,313 |
| Length | 103 |
| Max. P | 0.869421 |
| Location | 18,528,210 – 18,528,313 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 91.20 |
| Shannon entropy | 0.15231 |
| G+C content | 0.45647 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -16.16 |
| Energy contribution | -19.36 |
| Covariance contribution | 3.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18528210 103 + 27905053 ACGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACCCAAUGGUGUC-GCCGGCAACCGCUUUUCUUUUUUUUCCUU .((((....(((((.....)))))......(((((.((....)).)))))..........((((....))))..-))))((....))................. ( -21.60, z-score = -2.40, R) >droEre2.scaffold_4820 924791 99 - 10470090 ACGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCUCUACCA--UUGCGUCCGCCGGCAACCGCUUUUCCUUUUCCCU--- .((((....(((((.....)))))......(((((.((....)).)))))...............--........))))((....))..............--- ( -20.10, z-score = -2.64, R) >droYak2.chr3R 19378781 100 + 28832112 ACGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCUCUACCAA-UUGUGCCCGCCGGCAACCGCUUUUCCUUUUCCCU--- .((((....(((((.....)))))......(((((.((....)).)))))................-........))))((....))..............--- ( -20.10, z-score = -2.49, R) >droSec1.super_0 18884493 101 + 21120651 GCGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGAUUGACAACUUUUCCCCUACCAAAUUGUGUC-GCCGGCAACCGCUUUUCCUUUUCCCAU-- (((((....(((((.....)))))......(((((..(....)..))))).....................)))-)).(((....)))..............-- ( -17.40, z-score = -0.98, R) >droSim1.chrX_random 5176623 101 + 5698898 GCGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACCCAAUUGUGUC-GCCGGCAACCGCUUUUCCUUUUCCCAU-- (((((....(((((.....)))))......(((((.((....)).))))).....................)))-)).(((....)))..............-- ( -20.30, z-score = -2.37, R) >consensus ACGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACCAAAUUGUGUC_GCCGGCAACCGCUUUUCCUUUUCCCA___ .((((....(((((.....)))))......(((((.((....)).))))).........................))))((....))................. (-16.16 = -19.36 + 3.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:52 2011