| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,483,223 – 18,483,316 |
| Length | 93 |
| Max. P | 0.997210 |
| Location | 18,483,223 – 18,483,316 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 64.52 |
| Shannon entropy | 0.70563 |
| G+C content | 0.35488 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.81 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.66 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.06 |
| SVM RNA-class probability | 0.997210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18483223 93 + 27905053 AAACCCUACACUUUCUGGUCAUUGAAUGCAUGAGU-GCAUUUUCAUGGCAACAUGACCAUGGCCAG-AUUCGAUUAACUAAUUGAG--AAGAGUGAA- ........((((((((((((((.(((((((....)-))))))(((((....)))))..))))))))-)(((((((....)))))))--..)))))..- ( -33.40, z-score = -5.07, R) >droWil1.scaffold_181089 6156504 91 - 12369635 AAAUCUGUAGCUUUGCAAAAAUUGAAACGAUUUUCGAAAGUGAUGUGUUUUUAUGCUUUUAAAUUC------AACUUUAAAUUGGAAUAUAAGUCAC- .........(((((.(.(((((((...))))))).))))))(((.(((.(((.....((((((...------...))))))...))).))).)))..- ( -9.00, z-score = 1.55, R) >droPer1.super_0 3911943 92 - 11822988 AUAGAAGGUAUUCUGAGUUGAUUUAUUUUAUUGGU-AUCUUUCUUUGGUCCCAUGAUUUCUAUGCA-----GAGAUAUUUGCUACAAAAAAGUUGGAA .(((((....)))))..(..((((.((((..((((-(....((((((....((((.....))))))-----))))....))))).))))))))..).. ( -13.20, z-score = 1.22, R) >droEre2.scaffold_4820 877169 95 - 10470090 AAACCCUUCACUUUCUGGUCAUUGAAUGCCUGAAU-ACAUUUUCAUGGCAACAUGACCAUGGCCAG-AUUCGAUUAACUAAUUGAGC-AAAAUUGGCU ...............(((((((....((((((((.-.....)))).))))..))))))).((((((-.(((((((....))))))).-....)))))) ( -25.60, z-score = -2.98, R) >droYak2.chr3R 19332820 95 + 28832112 AAACCUUUCACUUUCUGGUCAUUGAAUGCAUGAAU-ACAUUUUCAUGGCAACAUGACCAUGGUCAG-AUUCGAUUAACUAAUUGAGCAAAGAGUGAA- ......((((((((.((.(((((((((...(((..-.(((..(((((....)))))..))).))).-)))))).........))).)).))))))))- ( -26.50, z-score = -2.93, R) >droSec1.super_0 18840720 96 + 21120651 AAACCUUUCACUUUCUGGUCAUUGAAUGCAUGAAU-GCAUUUUCAUGGCAACAUGACCAUGGCCAGGAUUCGAUUAACUAAUUGAGCAAAGAGUGAA- ......((((((((((((((((.(((((((....)-))))))(((((....)))))..))))))))(.(((((((....))))))))..))))))))- ( -33.60, z-score = -4.56, R) >droSim1.chr3R 18295120 96 + 27517382 AAACCUUUCACUUUCUGGUCAUUGAAUGCAUGAAU-GCAUUUUCAUGGCAACAUGACCAUGGCCAGGAUUCGAUUAACUAAUUGAGCAAAGAGUGAA- ......((((((((((((((((.(((((((....)-))))))(((((....)))))..))))))))(.(((((((....))))))))..))))))))- ( -33.60, z-score = -4.56, R) >consensus AAACCUUUCACUUUCUGGUCAUUGAAUGCAUGAAU_ACAUUUUCAUGGCAACAUGACCAUGGCCAG_AUUCGAUUAACUAAUUGAGCAAAGAGUGAA_ ......((((((((.(((((((....((((((((.......))))).)))..)))))))..........((((((....))))))....)))))))). ( -9.72 = -10.81 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:49 2011