| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,460,878 – 18,460,971 |
| Length | 93 |
| Max. P | 0.546905 |
| Location | 18,460,878 – 18,460,971 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 65.22 |
| Shannon entropy | 0.61700 |
| G+C content | 0.39311 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -8.75 |
| Energy contribution | -9.13 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18460878 93 - 27905053 ----CAAACAAAGUUUCUUUUUGUUUGCCGUUCCAUAA--AACUGUGACACCUGGUGGUAAGGUGGUAAUUAUUAUUACCUUGAGUGUGUGUGCUCUGC------------ ----(((((((((.....)))))))))..((..((...--...))..))(((....)))(((((((((.....)))))))))((((......))))...------------ ( -22.30, z-score = -1.20, R) >droSim1.chr3R 18273089 90 - 27517382 ----CAAACAGAGCUUCUUUUUGUUUGCCGUUCCAUAA--AUCUGUGACACCU---GGUAAGGUGGUAACUAUUAUUACCUUGAGUGUGUGUGCUCUGU------------ ----...(((((((...................((((.--...))))(((((.---..((((((((((.....))))))))))...).)))))))))))------------ ( -25.60, z-score = -2.59, R) >droSec1.super_0 18818807 102 - 21120651 ----CAAACAGUGCUUCUUUUUGUUUGCCGUUCCAUAA--AUCUGUGACACCU---GGUAAGGUGGUAACUAAUAUUACCUUGAGUGUGUGUUUGAAUUCAUGUGCUCUGU ----(((((((.........)))))))..((..((...--...))..))....---...(((((((((.....)))))))))(((..((((........))))..)))... ( -22.10, z-score = -0.74, R) >droYak2.chr3R 19310046 87 - 28832112 ----CAAACAGUGCUUCUUUUUGUUUGCCCAUCCAUAA--AUCUGUGACACCU---GGUAAGGUGGUAAUUAUUGCUGCCUUGUGUGUUUGUUUAA--------------- ----(((((((.........)))))))........(((--((....(((((..---..(((((..(((.....)))..))))).))))).))))).--------------- ( -18.70, z-score = -0.81, R) >droEre2.scaffold_4820 855427 94 + 10470090 ----CAAACAGUGCUUC-UUUUGUUUGCCCAUCCAUAA--AUCUGUGACACCU----GCUAGGUGGUAAAUAUUAUUACCCUGCGUUUGCCCUC-CUGCGCUCUGA----- ----....(((.((...-...............((((.--...))))......----((.(((.(((((((.............)))))))..)-)))))).))).----- ( -18.32, z-score = -0.91, R) >droMoj3.scaffold_6540 5836986 97 + 34148556 CAAAUAGACAAUUGUUGAUAAUAUUACUCAGUCAAUUAGCAGAAGCGAUAAUAUAAGCCCAUGUAG-AAAUAUU-UUACAAUCAAUGGGAGUUUCCCUU------------ ......(..(((((((((.........)))).)))))..).(((((...........(((((((((-(.....)-))))).....)))).)))))....------------ ( -13.70, z-score = -0.30, R) >consensus ____CAAACAGUGCUUCUUUUUGUUUGCCGUUCCAUAA__AUCUGUGACACCU___GGUAAGGUGGUAAAUAUUAUUACCUUGAGUGUGUGUUCUCUGU____________ ....(((((((.........)))))))...............................((((((((((.....))))))))))............................ ( -8.75 = -9.13 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:47 2011