| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,425,984 – 18,426,088 |
| Length | 104 |
| Max. P | 0.678396 |
| Location | 18,425,984 – 18,426,088 |
|---|---|
| Length | 104 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.14 |
| Shannon entropy | 0.54058 |
| G+C content | 0.65321 |
| Mean single sequence MFE | -45.57 |
| Consensus MFE | -25.55 |
| Energy contribution | -24.73 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678396 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 18425984 104 - 27905053 GCGGUGGCGCCGAAUUCGGUUCCGGUUCCC------GCUCCGGCUCCCUAUCGGC---AAACCGCUGCCGAGUCACCGGACUGCCGCUGUAGCUGUUGGAAUGCUGCAACGAU- ((((..(.((((....))))((((((..(.------((....))......(((((---(......)))))))..)))))))..))))((((((.........)))))).....- ( -42.40, z-score = -1.20, R) >droSec1.super_0 18784177 104 - 21120651 GCGGUGGCGCCGAAUUCGGUUCCGGUUCCC------GCUCCGGCUCCCUAUCGGC---AAACCGCUGCCGAGUCACUGGACUGCCGCUGUAGCUGUUGGAGUGCUGCAGCGAU- (((((((.(((((....((..((((.....------...))))..))...)))))---...)))))))..((((....))))..(((((((((.........)))))))))..- ( -47.30, z-score = -1.84, R) >droYak2.chr3R 19274710 104 - 28832112 GCGGUGGCGCCGAGUUCGGUUCCGGUUCCC------GCUCCGGCUCUCUGUCCGC---AAACCGCUGCCUGGUCACCGGACUGCCGCUGUAGCUGUUCGAGUGCUGCAGCGAU- (((((((.((((....)))).)))....))------))...(((.....(((((.---..((((.....))))...))))).)))((((((((.........))))))))...- ( -43.90, z-score = -0.73, R) >droEre2.scaffold_4820 820282 104 + 10470090 GCGGUGGCGCCGAGUUCGGUUCCGGUUCCC------GCUCCGGCUCCCUAUCCGC---AAACCGCUGCCUGGUCACCGGACUGCCGCUGUAGCUGUUGGAGUGCUGCAGCGAU- (((((((.((.((....((..((((.....------...))))..))...)).))---...)))))))..((((....))))..(((((((((.........)))))))))..- ( -42.10, z-score = -0.08, R) >droAna3.scaffold_13340 21842186 108 - 23697760 GUGGUGGCGCCGAGUUCGGUUCCGGUUCCCUGUCCUGGUCCGGCUCCCUUUCCGCUGAGAAUCGCGGACGGGUCACCGGACUGCCGCUGUAGCUGUUGGAGUGCUGCA------ ..((((((((((....))))((((((..((((((((((((((((.........)))).).)))).)))))))..))))))..))))))(((((.........))))).------ ( -51.30, z-score = -2.25, R) >dp4.chr2 26611539 113 + 30794189 GCGGUGGCGCCGAAUUCGGUUCUGGUUCCCUCUCUGUGUCCGGCUCGCGCUCUGUGGAGAUCCGUGGCCGGGUCACGGGACUGCCGCUGUAGCUGUUCGAGUGCUGCAACAAU- (((((((.((((....)))).))((((((......(((((((((.(((((((....)))...)))))))))).))))))))))))))((((((.........)))))).....- ( -48.40, z-score = -1.32, R) >droPer1.super_7 172470 113 - 4445127 GCGGUGGCGCCGAAUUCGGUUCUGGUUCCCUCUCUGUGUCCGGCUCGCGCUCUGUGGAGAUCCGUGGCCGGGUCACGGGACUGCCGCUGUAGCUGUUCGAGUGCUGCAACGAU- (((((((.((((....)))).))((((((......(((((((((.(((((((....)))...)))))))))).))))))))))))))((((((.........)))))).....- ( -48.40, z-score = -0.96, R) >droMoj3.scaffold_6540 5794471 101 + 34148556 GCGGCGGAGCCGAAUUGGGUUCCGGCUCA-------GACUCG---CGUUCCCCGU--GGCGCUGCCGGGUGACGGCUGGACUGCCGCUGUAGCUGUUCGAGUGCUGCAGUGGC- ((((.((((((((.((((((....)))))-------)..)))---.)))))))))--......((((.....))))......(((((((((((.........)))))))))))- ( -47.60, z-score = -0.49, R) >droGri2.scaffold_15074 3861687 105 - 7742996 GUGGCGGUGCCGAAUUUGGUUCCGGUUCC-------GGUUCGCUACGUUCUGUAU--AACGCUGACGGCUUACGGCCGGACUGCCGCUGUAGCUAUUCGAGUGUUGCAACGGCA ..((((((((.((((.((((.(((....)-------))...)))).)))).))))--..))))..((((.....))))....((((.((((((.........)))))).)))). ( -39.50, z-score = -0.62, R) >droVir3.scaffold_13047 9019876 101 + 19223366 GCGGCGGUGCCGAAUUCGGUUCCGGCUCU-------GGCUCG---CGUUCCGUGU--GGCGUUGCCGGGAAACGGCUGGGCUCCCGCUGUAACUGUUCGAGUGCUGUAGCGGC- ((.((((..(((((..((((((((((..(-------(.(.((---((...)))).--).))..))))))).(((((.((....)))))))..))))))).)..)))).))...- ( -44.80, z-score = -0.50, R) >consensus GCGGUGGCGCCGAAUUCGGUUCCGGUUCCC______GGUCCGGCUCGCUCUCCGC___AAACCGCUGCCGGGUCACCGGACUGCCGCUGUAGCUGUUCGAGUGCUGCAGCGAU_ (((((((.((((....))))((((((................................................)))))))))))))((((((.........))))))...... (-25.55 = -24.73 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:44 2011