| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,419,956 – 18,420,016 |
| Length | 60 |
| Max. P | 0.685920 |
| Location | 18,419,956 – 18,420,016 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 81.04 |
| Shannon entropy | 0.32611 |
| G+C content | 0.44167 |
| Mean single sequence MFE | -17.35 |
| Consensus MFE | -10.61 |
| Energy contribution | -10.00 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18419956 60 - 27905053 AGGCAGGGUUUAUUUUUGUUAUCGAUUUGCAUUCGCCUUGGUAGCAAAAUUUGCCCCACC------------ .((..((((....((((((((((((...((....)).))))))))))))...))))..))------------ ( -19.60, z-score = -2.99, R) >droSim1.chr3R 18231594 60 - 27517382 AGGCAGAGUUUAUUUUUGUUAUCGAUUUGCAUUCGCCUUGGUAGCAGCAUUUGCCCCACC------------ .((((((((.......(((((((((...((....)).))))))))))).)))))).....------------ ( -14.91, z-score = -1.94, R) >droSec1.super_0 18772736 60 - 21120651 AGGCAGAGUUUAUUUUUGUUAUCGAUUUGCAUUCGCCUUGGUAGCAGCAUUUGCCCCACC------------ .((((((((.......(((((((((...((....)).))))))))))).)))))).....------------ ( -14.91, z-score = -1.94, R) >droYak2.chr3R 19268598 60 - 28832112 AGGCAGGGUUUAUUUUUGUUAUUGAUUUGCAUUCGCCUUGGUAGCAGCAUUUGCCCCACC------------ .((..((((..((..(((((((..(...((....)).)..))))))).))..))))..))------------ ( -15.20, z-score = -0.84, R) >droEre2.scaffold_4820 814345 60 + 10470090 AGGCAGGGUUUAUUUUUGUUAUUGAUUUGCAUUCGCCUUGGUAGCAGCAUUUGCCCCACC------------ .((..((((..((..(((((((..(...((....)).)..))))))).))..))))..))------------ ( -15.20, z-score = -0.84, R) >droAna3.scaffold_13340 21835892 72 - 23697760 AGUCAGUGUUUAUUUUUGCUAUUGAUUUGCAUUUGCCUUGGAUUGGAUAGCCAGUCUGGCAGUUGCAGUUGC .((((((((........)).))))))(((((.(((((..(((((((....)))))))))))).))))).... ( -24.30, z-score = -2.91, R) >consensus AGGCAGGGUUUAUUUUUGUUAUCGAUUUGCAUUCGCCUUGGUAGCAGCAUUUGCCCCACC____________ .((((((........((((((((((...((....)).))))))))))..))))))................. (-10.61 = -10.00 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:40 2011