| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,390,135 – 18,390,231 |
| Length | 96 |
| Max. P | 0.807576 |
| Location | 18,390,135 – 18,390,231 |
|---|---|
| Length | 96 |
| Sequences | 10 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Shannon entropy | 0.50077 |
| G+C content | 0.36199 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -10.51 |
| Energy contribution | -10.49 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18390135 96 - 27905053 ------AAUUCAAUAAUAAUUGUUUAACGGU--UUGUUCGCCAGUUUGACUGUUGGCUAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCAGC-----AACCC ------......................(((--(.(((.(((((((...(....).....((((((((((((.....))))))))))))))))))))))-----)))). ( -24.80, z-score = -1.82, R) >droGri2.scaffold_14906 6825843 84 + 14172833 -AUUAAAAACCAAUAAUAAUUG-UUAACGGU--U-CC--AUCAACAUGU-------GCGUAUGUAAAUGUUUGCGGAAGGAAUUUGCAUAAUCUGCAG----------- -.....................-.....(((--(-((--.((..((...-------((((......)))).))..)).))))))((((.....)))).----------- ( -13.00, z-score = 0.45, R) >droWil1.scaffold_181130 1427105 95 + 16660200 AAUC--AAAUCAAUUAUAAUUGUUUAACGGU--UGUU--GUCAAUAUGUUUU---CGUAUAUGUAAAUAUUUGCGGAAGAAAUUUGCAUAACAUGCAGUGGCUC----- ....--.........(((((((.....))))--))).--((((...(((...---.((.(((((((((.....(....)..)))))))))))..))).))))..----- ( -16.20, z-score = -0.12, R) >droPer1.super_7 1052972 96 - 4445127 ------AAUUCAAUAAUAAUUGUUUAACGGU--UGUUCGCCUGCUUUGUUUUCGGUGUCUAUGUAAAUGUUUGCGGAAGGCAUUUGCAUAACAUGCAGAGGCUC----- ------........((((((((.....))))--)))).((((...((((.....((((.(((((((((((((.....)))))))))))))))))))))))))..----- ( -25.10, z-score = -1.72, R) >dp4.chr2 27505515 95 + 30794189 ------AAUUCAAUAAUAAUUGUUUAACGGU--UGUUCGCCUGCUUUGUUUUCGGUGUCUAUGUAAAUGUUUGCGGAAGGCAUUUGCAUAACAUGCAGAGGCU------ ------........((((((((.....))))--)))).((((...((((.....((((.(((((((((((((.....))))))))))))))))))))))))).------ ( -25.10, z-score = -1.65, R) >droAna3.scaffold_13340 21805081 100 - 23697760 -------AUACAAUAAUAAUUGUUUAACGGUUGUUGUCGGCCAGUUUGGCUGCUGGCUA--UGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUCGCAGUUCGAGAGUUC -------...(.((((((((((.....)))))))))).)((((((......))))))((--(((((((((((.....))))))))))))).((((.....))))..... ( -31.70, z-score = -3.14, R) >droEre2.scaffold_4820 783314 89 + 10470090 ------AAUUCAAUAAUAAUUGUUUAACGGU--UUGUUGGCCAGUUUGGCUGUUGGCUAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCA------------ ------....((((((..((((.....))))--))))))(((((((((((.....)))))((((((((((((.....)))))))))))).)))))).------------ ( -27.90, z-score = -3.63, R) >droYak2.chr3R 19238471 96 - 28832112 ------AAUUCAAUAAUAAUUGUUUAACGGU--UUGUUGGCCAGUUUGGCUGUUGGCUAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCAGU-----AACCC ------......................(((--(.....(((((((((((.....)))))((((((((((((.....)))))))))))).))))))...-----)))). ( -28.00, z-score = -2.56, R) >droSec1.super_0 18743255 96 - 21120651 ------AAUUCAAUAAUAAUUGUUUAACGGU--UUGUUCGCCAGUUUGGCUGUUGGCCAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCAGU-----AACCC ------......................(((--(.....(((((((((((.....)))))((((((((((((.....)))))))))))).))))))...-----)))). ( -29.20, z-score = -2.90, R) >droSim1.chr3R 18199812 96 - 27517382 ------AAUUCAAUAAUAAUUGUUUAACGGU--UUGUUCGCCAGUUUGGCUGUUGGCCAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCAGU-----AACCC ------......................(((--(.....(((((((((((.....)))))((((((((((((.....)))))))))))).))))))...-----)))). ( -29.20, z-score = -2.90, R) >consensus ______AAUUCAAUAAUAAUUGUUUAACGGU__UUGUUGGCCAGUUUGGCUGUUGGCUAAAUGUAAAUGUUUGCGGAAGAUAUUUGCAUAACUGGCAGU__________ ...................((((.....(((........)))..................((((((((((((.....)))))))))))).....))))........... (-10.51 = -10.49 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:36 2011