| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,297,985 – 8,298,054 |
| Length | 69 |
| Max. P | 0.909077 |
| Location | 8,297,985 – 8,298,054 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 66.19 |
| Shannon entropy | 0.59284 |
| G+C content | 0.36015 |
| Mean single sequence MFE | -13.04 |
| Consensus MFE | -7.04 |
| Energy contribution | -7.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8297985 69 + 23011544 -----AUGUCGAUUCAUUAUUUUGGCUGAAUUAGUUUUGGCCAAAUAAAACCUGUUGGCCGAAAUGCGUACAGC -----...................((((.....(((((((((((..........))))))))))).....)))) ( -18.20, z-score = -1.97, R) >droSim1.chr2L 8085205 68 + 22036055 -----AUGUUGAUUCAUUAUUUUGUCUGAAUUAAUAUUGGCCAAAUAAAACCUGUUGGCCGAAAUGCUGUACG- -----.((((((((((..........))))))))))((((((((..........))))))))...........- ( -16.40, z-score = -3.12, R) >droSec1.super_3 3794104 68 + 7220098 -----AUGUUGGUUCAUUAUUUUUUCUGAAUUAGUAUUGGCCAAAUAAAACCUGUUGGCCGAAAUGCUGUACG- -----....(((((((..(....)..)))))))(((((((((((..........))))))))..)))......- ( -13.30, z-score = -1.17, R) >droEre2.scaffold_4929 17207281 67 + 26641161 -----AUGUUCAUUCAAUAUUUAAGGUGA-UUAGUGUUUGCCAAAUGAAACCUGUUGGCUGAAAUACCGAAAG- -----...((((..(((((((((.((..(-.......)..))...))))...)))))..))))..........- ( -9.20, z-score = 0.11, R) >droAna3.scaffold_12916 10213458 64 - 16180835 ACCCGAAUUCAGGUCGUUAUAUUUUAUGAUUU--UUUGGCUAAAACGAAACCUGUUAAUGCCUCCG-------- ..........(((((((........)))))))--...(((...((((.....))))...)))....-------- ( -8.10, z-score = -0.01, R) >consensus _____AUGUUGAUUCAUUAUUUUGUCUGAAUUAGUAUUGGCCAAAUAAAACCUGUUGGCCGAAAUGCUGAAAG_ ........((((((((..........))))))))..((((((((.((.....))))))))))............ ( -7.04 = -7.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:41 2011