| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,378,451 – 18,378,577 |
| Length | 126 |
| Max. P | 0.662429 |
| Location | 18,378,451 – 18,378,577 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 90.61 |
| Shannon entropy | 0.15622 |
| G+C content | 0.48421 |
| Mean single sequence MFE | -37.09 |
| Consensus MFE | -26.38 |
| Energy contribution | -27.38 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18378451 126 + 27905053 ACAUUUGAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAAUUCCCAGU-------UCUCAGUCCACAGUUCCGA-GUGCC-AAGUAUCCAAAUAUCGAGUGUUCUGAUACUGCUGACAAGGCAGCAC .((((((.((((..(((...)))(((..((((.((((((...........))))))-------.))).)..))))))).)))-)))..-.((((((..(((((...)))))..))))))((((......)))).. ( -37.00, z-score = -2.42, R) >droSim1.chr3R 18188220 126 + 27517382 ACAUUUAAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAGUUCCCAGU-------UCUCAGUCCUCAGUUCCGA-GUGCC-AAGUGUCCAAGUAUCGAGUGUUCUGAUACUGCUGACAAGGCAUCAG ...........((((((...))))))...(((.((((((...........))))))-------.)))....(((......))-)((((-...((((..((((((.((....))))))))...)))).)))).... ( -37.20, z-score = -2.80, R) >droSec1.super_0 18731663 133 + 21120651 ACAUUUGAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAGUUCCCAGUGCCCAGUUCUCAGUCCUCUGUUCCGA-GUGCC-AAGUGUCCAAGUAUCGAGUGUUCUGAUACUGCUGACAAGGCAUCAG .((((((((..((((((...))))))))))))))(((((....)))))......(((((.....((..(..(((......))-)..).-.))((((..((((((.((....))))))))...)))).)))))... ( -40.80, z-score = -2.59, R) >droYak2.chr3R 19226029 127 + 28832112 ACAUUUGAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAGUUCGCAGU-------UCCCAGUUCCGAGUGCCAA-GUACCCAAGUAUCCAAGUAUCGAGUGUUCUGAUACUGCUGACAAGGCAGCAG ((((((((.(((.(((.......(..((((.(.((((((.................-------.)))))).)))))..)...-((((....)))))))))).)))))))).......((((((......)))))) ( -34.17, z-score = -1.23, R) >droEre2.scaffold_4820 771652 128 - 10470090 ACAUUUGAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAGUUCCCAGU-------UCCCAGUUCCGAGUGCCAAAGUACCCAAGUACCCAAGUAUCGAGUGUUCUGAUACUGCUGACAAGGCAGCAG ((((((((.(((.(((.......(..((((.(.((((((.................-------.)))))).)))))..)....((((....)))))))))).)))))))).......((((((......)))))) ( -36.27, z-score = -2.31, R) >consensus ACAUUUGAAAUUAUGGCAAAGCCGUGUUCGAGUGCUGGGUAAACCCAGUUCCCAGU_______UCUCAGUCCCCAGUUCCGA_GUGCC_AAGUAUCCAAGUAUCGAGUGUUCUGAUACUGCUGACAAGGCAGCAG .((((((((..((((((...))))))))))))))(((((....)))))....................................((((...((.....((((((.((....))))))))....))..)))).... (-26.38 = -27.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:32 2011