| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,341,076 – 18,341,171 |
| Length | 95 |
| Max. P | 0.839125 |
| Location | 18,341,076 – 18,341,171 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 87.93 |
| Shannon entropy | 0.19555 |
| G+C content | 0.66850 |
| Mean single sequence MFE | -48.62 |
| Consensus MFE | -42.46 |
| Energy contribution | -42.46 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839125 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 18341076 95 - 27905053 AGCCUCGUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUACUGUUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAAUGGGUG--------------------- .((((.....((((((((((......)))))).))))((((((((((((((....))))))...((((((....)))))).))).))))))))).--------------------- ( -42.50, z-score = -0.97, R) >droSim1.chr3R 18149789 95 - 27517382 AGCCUCGUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUACUGUUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAUUGGGUG--------------------- .((((((....))))))((.(((((((((((....))((..(((.((((((....))))))..)))..)).))))))))).....))........--------------------- ( -42.40, z-score = -0.92, R) >droSec1.super_0 18694508 95 - 21120651 AGCCUCGUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUACUGUUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAUUGGGUG--------------------- .((((((....))))))((.(((((((((((....))((..(((.((((((....))))))..)))..)).))))))))).....))........--------------------- ( -42.40, z-score = -0.92, R) >droYak2.chr3R 19187463 116 - 28832112 AGCCUCUUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUAUUGUUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAUUGGGUGCCGGGGGCGGAGGUGGGGGCG .(((((....((((((((((......)))))).))))((..(((.((((((....))))))..)))..))((((.(((((((((.((((...))))))))))))).))))))))). ( -67.30, z-score = -3.90, R) >droEre2.scaffold_4820 734373 101 + 10470090 AGCCUCUUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUAUCGCUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAUUGGAUGGUGGCG--------------- .(((.((((.(....((((.((((((((((((.(((..(((.(((.((....))))).)))..))).)).))))))))))...))))..).)).)).))).--------------- ( -48.50, z-score = -1.60, R) >consensus AGCCUCGUCGGUGGGGCGCUGGUGGUGGCGCCUCCGCGUUGCCAGUCGAUACUGUUGUCGAAAUGGUGGCCGCCGCCGCUUCUGUGCAUUGGGUG_____________________ .(((((......)))))((.(((((((((((....))((..(((.((((((....))))))..)))..)).))))))))).....))............................. (-42.46 = -42.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:30 2011