| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,322,510 – 18,322,566 |
| Length | 56 |
| Max. P | 0.770026 |
| Location | 18,322,510 – 18,322,566 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 71.17 |
| Shannon entropy | 0.46039 |
| G+C content | 0.27965 |
| Mean single sequence MFE | -9.51 |
| Consensus MFE | -4.02 |
| Energy contribution | -4.46 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18322510 56 + 27905053 UUGGGUUCUAGGAAAAAAAAACAAACAUAUUCAUUAUAUGCUUCUUAGAAACGAAU (((..(((((((((...........(((((.....))))).))))))))).))).. ( -8.90, z-score = -2.65, R) >droSec1.super_0 18675421 53 + 21120651 UUGGGUUCUAGGAAAAAUAGA---ACAUAUUCAUUAUAUGCUUCUUAGAAACAAAU (((..(((((((((..(((..---............)))..))))))))).))).. ( -9.84, z-score = -2.60, R) >droSim1.chr3R 18130389 53 + 27517382 UUGGGUUCUAGGAAGAAUAGA---ACAUAUUCAUUAUAUGCUUCUUAGAAACAAAU (((..((((((((((......---.(((((.....))))))))))))))).))).. ( -13.11, z-score = -3.65, R) >apiMel3.GroupUn 356852831 56 - 399230636 UUUGAUUUUCAGAAAAAAAAGCAUACACUUGUGUCUUUCGAACAUGACAAGCAAUU .(((.((.(((......((((.((((....))))))))......))).)).))).. ( -6.20, z-score = 0.34, R) >consensus UUGGGUUCUAGGAAAAAAAAA___ACAUAUUCAUUAUAUGCUUCUUAGAAACAAAU ...(.(((((((((...........................))))))))).).... ( -4.02 = -4.46 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:26 2011