| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,321,997 – 18,322,084 |
| Length | 87 |
| Max. P | 0.559643 |
| Location | 18,321,997 – 18,322,084 |
|---|---|
| Length | 87 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 73.22 |
| Shannon entropy | 0.46952 |
| G+C content | 0.50166 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -12.48 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18321997 87 + 27905053 UAAAAGGCCAUAAAAAGCUGGCCAGGAAUGU---CAAUGCCUGGUUGG---CUUGGUGGGCUGGC-ACGGCUUAUGGCUGGGUGGAA--AAAGUGA ....((.((((...((((..((((((.((..---..)).))))))..)---))).)))).)).((-.((((.....)))).))....--....... ( -34.40, z-score = -3.13, R) >droYak2.chr3R 19166509 92 + 28832112 UAAAUGGACAUAAAAAGCUGGCCAGGAAUGU---CAAUGCCUGCCUGGUUGCUUGGUGGCCUGGC-ACGGCUUAUGGCUUGGUAGCACAAAAGUGA ................((((.(((((.(((.---....(((((((.(((..(...)..))).)))-).))).)))..))))))))).......... ( -30.20, z-score = -0.50, R) >droSec1.super_0 18674914 87 + 21120651 UAAAAGGCCAUAAAAAGCUGGACAGGAAUGU---CAAUGGCUGGUUGG---CUUGGUGGCCUGGC-ACGGCUUAUGGCUGGGUGGAA--AAAGUGA ....(((((((...((((..(.(((..((..---..))..))).)..)---))).))))))).((-.((((.....)))).))....--....... ( -29.20, z-score = -2.34, R) >droSim1.chr3R 18129877 87 + 27517382 UAAAAGGCCAUAAAAAGCUGGCCAGGAAUGU---CAAUGCCUGGUUGG---CUUGGUGGCCUGGC-ACGGCUUAUGGCUGGGUGGAA--AAAGUGA ....(((((((...((((..((((((.((..---..)).))))))..)---))).))))))).((-.((((.....)))).))....--....... ( -39.00, z-score = -4.17, R) >droAna3.scaffold_13340 21732804 94 + 23697760 UAAAAGUACAUAAAAACACAAGCGAGGGGGCACAUAACGUUUAAACGGGC-AAGAAUGUCCUGGUUGCCUAACACGGCGGGAAUGGA-GAAAGGGA .....................((......))......(((((....((((-(....)))))...(((((......))))))))))..-........ ( -15.00, z-score = 0.86, R) >consensus UAAAAGGCCAUAAAAAGCUGGCCAGGAAUGU___CAAUGCCUGGUUGG___CUUGGUGGCCUGGC_ACGGCUUAUGGCUGGGUGGAA__AAAGUGA ....(((((((......(..(.((((.((.......)).)))).)..).......))))))).....((((.....))))................ (-12.48 = -13.12 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:25 2011