| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,294,735 – 8,294,837 |
| Length | 102 |
| Max. P | 0.740627 |
| Location | 8,294,735 – 8,294,837 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Shannon entropy | 0.31611 |
| G+C content | 0.47189 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -27.51 |
| Energy contribution | -27.32 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8294735 102 + 23011544 AGGAACUCCAGCCCAACAACCAUAUGCCACAUGGCACCUCCAUUAGCCAAAGGGCAGUGGCCAUGGGCUCUAAAAUAGAUAUGGGGAAAGGGUAU-AUUAUAU--------- .((....)).((((.....(((((.(((.((((((.....((((.(((....))))))))))))))))((((...))))))))).....))))..-.......--------- ( -33.60, z-score = -1.37, R) >droSim1.chr2L 8081840 106 + 22036055 AGGAACUCCAGCCCA---ACCAUAUGCCACAUGGCACCUCCAUUAGCCAAAGGGCAGUGGCCAUGGGCUCUAAAAUAGAUAUGGGGAAAGGGUAUUAUUAUUAUUAUAU--- .((....)).((((.---.(((((.(((.((((((.....((((.(((....))))))))))))))))((((...))))))))).....))))................--- ( -32.40, z-score = -0.83, R) >droSec1.super_411 9000 95 + 12313 AGGAACUCCAGCCCA---ACCAUAUGCCACAUGGCACCUCCAUUAGCCAAAGGGCAGUGGCCCUU--------------UAUGGGGAAAGGGUAUCCUUAUCCUUAUUAUAU ((((......((((.---......((((....)))).((((((.....(((((((....))))))--------------)))))))...)))).......))))........ ( -30.62, z-score = -0.99, R) >droYak2.chr2L 10932307 94 + 22324452 AGGAACUCCAGCCCA---ACCAUGUGCCAUAUGGCACCUCCAUUAGCCAAAGGGCAGUGGCCAUUGGCUCUAAAAUAGAUAUGGGGAAAGGGUAU-AU-------------- .((....)).((((.---.....(((((....)))))((((((..(((((..(((....))).)))))((((...)))).))))))...))))..-..-------------- ( -34.30, z-score = -1.61, R) >consensus AGGAACUCCAGCCCA___ACCAUAUGCCACAUGGCACCUCCAUUAGCCAAAGGGCAGUGGCCAUGGGCUCUAAAAUAGAUAUGGGGAAAGGGUAU_AUUAU___________ .((....)).((((.....(((((((((....))))...(((((.(((....))))))))...................))))).....))))................... (-27.51 = -27.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:41 2011