| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,307,527 – 18,307,634 |
| Length | 107 |
| Max. P | 0.951210 |
| Location | 18,307,527 – 18,307,634 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.41 |
| Shannon entropy | 0.21527 |
| G+C content | 0.38785 |
| Mean single sequence MFE | -21.71 |
| Consensus MFE | -21.23 |
| Energy contribution | -21.13 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18307527 107 + 27905053 AACUGACAACGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUCGCGCCAUGGAUACUCUGUAAAUUCCCAUAAGCAAAC------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -23.40, z-score = -1.72, R) >droEre2.scaffold_4820 700069 107 - 10470090 AACUGACAACGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUCGCGCCAUGGAUACUCUGUAAAUUCCCAUAAGCAAAC------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -23.40, z-score = -1.72, R) >droYak2.chr3R 19153004 107 + 28832112 AACUGACAACGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUCGCGCCAUGGAUACUCUGUAAAUUCCCAUAAGCAAAC------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -23.40, z-score = -1.72, R) >droSec1.super_0 18661834 107 + 21120651 AACUGACAACGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUAGCGCCAUGGAUACUCUGUAAAUUCCCAUAAGCAAAC------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)))).))....)).))))))))..................------------ ( -21.90, z-score = -1.19, R) >droSim1.chr3R 18116685 107 + 27517382 AACUGACAACGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUCGCGCCAUGGAUACUCUGUAAAUUCCCAUAAGCAAAC------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -23.40, z-score = -1.72, R) >dp4.chr2 17021936 107 - 30794189 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGUCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUUCCAUAAAACAAA------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -20.90, z-score = -1.58, R) >droPer1.super_0 6674768 107 + 11822988 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGUCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUUCCAUAAAACAAA------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -20.90, z-score = -1.58, R) >droWil1.scaffold_181089 2783233 119 + 12369635 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUUCCAUAAUCUAAUAUAACUAACUAA ..((((....(((.((((.....)))))))..))))...(((.((((((..(((......)))..)))))).)))..((((.............))))..................... ( -21.52, z-score = -2.00, R) >droVir3.scaffold_12822 3451588 107 - 4096053 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAACACGUCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUUAACUAAAACUAA------------ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))..................------------ ( -20.60, z-score = -1.65, R) >droMoj3.scaffold_6540 849292 108 - 34148556 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAACAGGUCUUCAUAUUUCUGACUCUGAUUGCGCCUUGGAUACUUUGUAAAUUUUGAAUAAUGCAAA----------- .....(((..(((((..((....((((.((..((((((((((((......)))))).))))))....))..))))...)).))))))))...................----------- ( -18.80, z-score = 0.10, R) >droGri2.scaffold_15074 3144572 104 + 7742996 AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAACACGUCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUAAACUAAAAA--------------- .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).))))))))...............--------------- ( -20.60, z-score = -1.74, R) >consensus AACUGACAAUGAGUACGCCUUAUGUGUCUCUUUCAGAAUGUGAAAUCGCCUUCAUAUUUCUGACUGUGAUUGCGCCUUGGAUACUCUGUAAAUUCCCAUAAACAAAC____________ .....(((..(((((..((...((((((.(..((((((((((((......)))))).))))))..).)).))))....)).)))))))).............................. (-21.23 = -21.13 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:24 2011