| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,305,281 – 18,305,401 |
| Length | 120 |
| Max. P | 0.889000 |
| Location | 18,305,281 – 18,305,401 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.75 |
| Shannon entropy | 0.56540 |
| G+C content | 0.57950 |
| Mean single sequence MFE | -47.82 |
| Consensus MFE | -19.42 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.90 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18305281 120 + 27905053 CCAACGUUCAGGUCGGCGGCAAGUUCAGCCGGAACGGUCGCAAUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUUGCCGGACUUUCGGUGAACAAGUUACGCAUCUUGGACUUGGCCGUCG ((((.(((((((...(((((..(((((.(((((((((((((..(((...))))))))))))).((((((....)))))).....))))))))..))..)))..)))))))))))...... ( -55.60, z-score = -3.20, R) >apiMel3.Group5 11970935 117 - 13386189 CGACCAUUCAAAUUGGCGGCCGAUGGAAUCGCAACAAAGGCA---GAGUGGAAAGGCCAUUCUUGGGUAUAAUUGCCGGUCUUGUUGUAAACGGUGCACGAAUUUUAGAACUUGCUGCUU ..............((((((...((((((.(((((((.((((---((((((.....)))))))..((((....)))).))))))))))...((.....)).))))))......)))))). ( -31.70, z-score = -0.10, R) >anoGam1.chr2R 11628670 120 - 62725911 CCAACAUACAGGUCGGUGGCAAGAUCGCACGCAACGGACGUUCGCGUAUCGAGAGACCCUUCAGCGGGGUGAUCGCCGGCCUGUCCGUCAAUCGGCUGCGCGUGCUCGAUCUGGCCGCGG ...............(((((.(((((((((((..(((.((.((((...((....))(((......))))))).)))))((..(.(((.....)))).))))))))..))))).))))).. ( -49.90, z-score = -0.54, R) >droGri2.scaffold_15074 3140747 120 + 7742996 CCAAUAUACAAGUGGGCGGCAAAUUUAGUCGCAACGGUCGCACAAGGAUCGAGCGUUCUUUUGCUGGUGUCAUUGCCGGUUUGUCUGUGAAUAAGCUGCGCAUUUUGGAUUUGGCCGUCG ..............((((((((((((((.(((..(((((.......)))))((((......)))).))).)..(((((((((((......)))))))).)))...))))))).)))))). ( -36.50, z-score = -0.35, R) >droMoj3.scaffold_6540 846641 120 - 34148556 CGAACAUUCAAGUUGGCGGCAAAUUUAGUCGCAAUGGCCGCACGAGAAUCGAGCGUCCUUUUGCUGGUGUCAUCGCCGGUUUGUCGGUGAAUAAGCUGCGCAUCCUGGACCUGGCUGUCG (((............(((((.......)))))...((((((.((.....)).))((((...(((((((....(((((((....)))))))....)))).)))....))))..)))).))) ( -38.80, z-score = 0.16, R) >droVir3.scaffold_12822 3448791 120 - 4096053 CGAAUAUUCAGGUGGGCGGCAAAUUUAGCCGCAACGGUCGCACCAGGAUCGAGCGACCGUUCGCGGGCGUCAUCGCCGGCUUGUCGGUGAACAAGCUGCGCAUCCUGGAUCUGGCCGUCG .....(((((((((.(((((........(((((((((((((...........))))))))).))))......(((((((....)))))))....))))).)).))))))).......... ( -54.00, z-score = -2.23, R) >droWil1.scaffold_181089 2779749 120 + 12369635 CCAAUAUACAAGUGGGCGGUAAAUUUAGCCGCAACGGUCGCACACGUAUCGAACGGCCAUUUGCUGGCGUUAUUGCCGGCCUUUCUGUGAACAAGUUGCGUAUACUGGAUUUGGCCGUCG ..............((((((((((((((.((((((..(((((..(((.....))).......(((((((....))))))).....)))))....))))))....)))))))).)))))). ( -41.60, z-score = -1.37, R) >droPer1.super_0 6671994 120 + 11822988 CCCAUGUCCAAGUCGGCGGCAAGUUCAGUCGCAACGGCCGCAGUCGCAUCGAGCGGCCGUUCGCUGGAGUCAUUGCCGGACUCUCGGUGAACAAAUUGCGCAUCUUGGAUUUGGCCGUAG .(((.(((((((...(((((.......)))((((.((((((..(((...)))))))))(((((((((((((.......))))).))))))))...))))))..))))))).)))...... ( -55.20, z-score = -3.79, R) >dp4.chr2 17019213 120 - 30794189 CCAAUGUCCAAGUCGGCGGCAAGUUCAGUCGCAACGGCCGCAGUCGCAUCGAGCGGCCGUUCGCUGGAGUCAUUGCCGGACUCUCGGUGAACAAAUUGCGCAUCUUGGAUUUGGCCGUAG ((((.(((((((...(((((.......)))((((.((((((..(((...)))))))))(((((((((((((.......))))).))))))))...))))))..)))))))))))...... ( -54.30, z-score = -3.70, R) >droAna3.scaffold_12911 5346155 120 + 5364042 CCAAUGUUCAGGUCGGCGGCAAAUUCAGCCGCAACGGUCGCAAUCGUAUCGAGCGUCCGUUUGCCGGCGUGAUUGCCGGACUUUCGGUGAACAAGUUGCGAAUCCUGGAUCUGGCCGUAG ...(((..((((((.(((((.......)))))..((((((((((..(((((((.(((((....).((((....)))))))).))))))).....)))))))...)))))))))..))).. ( -48.20, z-score = -2.13, R) >droEre2.scaffold_4820 697852 120 - 10470090 CCAACGUUCAGGUCGGCGGCAAGUUCAGCCGGAACGGUCGCAAUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUCGCCGGACUUUCGGUGAACAAGUUACGUAUCUUGGACUUGGCCGUCG ((((.(((((((...(((((..(((((.(((((((((((((..(((...))))))))))))).((((((....)))))).....))))))))..))..)))..)))))))))))...... ( -55.40, z-score = -3.16, R) >droYak2.chr3R 19150701 120 + 28832112 CCAACGUUCAGGUCGGCGGCAAGUUCAGCCGGAACGGUCGCACUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUCGCCGGACUUUCGGUAAACAAGUUACGCAUCUUGGACUUGGCCGUCG .............((((((((((((..((((((((((((((..(((...))))))))))))).((((((....)))))).....))))...((((........))))))))).))))))) ( -54.60, z-score = -3.09, R) >droSec1.super_0 18659585 120 + 21120651 CCAACGUUCAGGUCGGCGGCAAGUUCAGUCGGAACGGUCGCAAUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUCGCCGGACUUUCGGUGAACAAGUUACGCAUCUUGGACUUGGCCGUCG ((((.(((((((...(((((..(((((.(((((((((((((..(((...))))))))))))).((((((....)))))).....))))))))..))..)))..)))))))))))...... ( -54.40, z-score = -2.95, R) >droSim1.chr3R 18114245 120 + 27517382 CCAACGUUCAGGUCGGCGGCAAGUUCAGUCGGAACGGUCGCAAUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUCGCCGGACUUUCGGUGAACAAGUUACGCAUCUUGGACUUGGCCGUCG ((((.(((((((...(((((..(((((.(((((((((((((..(((...))))))))))))).((((((....)))))).....))))))))..))..)))..)))))))))))...... ( -54.40, z-score = -2.95, R) >triCas2.ChLG7 5302136 117 + 17478683 CCCAAAUCCAGAUUGGUGGCAAAUGGA---GCAAAGGCAAAUCACGGAUCGAGCGCCCUUUCACCGGAAUCAUCUCCGGAGUGGUCGUUAACCGCCUGCGAGUCCUAGACUUAGCGGCCG ......((((..(((....))).))))---.....(((......(((....((((.((...(.(((((......))))).).)).))))..)))..((((((((...))))).)))))). ( -32.70, z-score = 0.75, R) >consensus CCAACGUUCAGGUCGGCGGCAAGUUCAGUCGCAACGGUCGCACUCGAAUCGAGCGGCCGUUCGCCGGCGUGAUCGCCGGACUUUCGGUGAACAAGUUGCGCAUCUUGGACUUGGCCGUCG ...............(((((..((((((.....................((((......))))((((((....)))))).........................))))))...))))).. (-19.42 = -18.53 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:23 2011