| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,301,119 – 18,301,190 |
| Length | 71 |
| Max. P | 0.935001 |
| Location | 18,301,119 – 18,301,190 |
|---|---|
| Length | 71 |
| Sequences | 8 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 72.09 |
| Shannon entropy | 0.55682 |
| G+C content | 0.36352 |
| Mean single sequence MFE | -10.43 |
| Consensus MFE | -6.76 |
| Energy contribution | -7.25 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18301119 71 + 27905053 ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUCCCCUAUCACGAG-CGUGAUCUAAAUGACCUUCUUUUG---- ............((.(((((.(((....)))........(((((...-.)))))....))))))).......---- ( -11.50, z-score = -1.28, R) >droSim1.chr3R 18110093 71 + 27517382 ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUCCCCUAUCACGAG-CGUGAUCUAAAUGACCUUCUUUUG---- ............((.(((((.(((....)))........(((((...-.)))))....))))))).......---- ( -11.50, z-score = -1.28, R) >droSec1.super_0 18655544 68 + 21120651 ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUUCCCUAUCACAAG-CGUGAUCUAAAUGACCUUUUG------- ............((.(((((.(((....)))........(((((...-.)))))....)))))))....------- ( -11.00, z-score = -1.21, R) >droYak2.chr3R 19146506 70 + 28832112 ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUCCCCUAUCACGAG-CGUGAUCUAAAUGACCUUCUUUG----- ............((.(((((.(((....)))........(((((...-.)))))....)))))))......----- ( -11.50, z-score = -1.31, R) >droEre2.scaffold_4820 693645 70 - 10470090 ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUCCCCUAUCACGAG-CGUGAUCUAAAUGACCUUCUUUG----- ............((.(((((.(((....)))........(((((...-.)))))....)))))))......----- ( -11.50, z-score = -1.31, R) >droAna3.scaffold_12911 5341981 68 + 5364042 GCCAACAAUGUCAAAUGCAAAUGCAAAUGCAAUUUCCUAAUCACAAA-CGUGAUCAAAACGACCUUUUU------- .........(((...((((........))))........(((((...-.)))))......)))......------- ( -9.30, z-score = -1.21, R) >droVir3.scaffold_12822 3444799 75 - 4096053 ACAACAGCAACUAAUGUCGAAUGCAAAUGCAAUUUUCUAAUCACAAA-UGUGAUCUUAACGAUCUUUUCUAUUUCA ...............((((..(((....)))........(((((...-.))))).....))))............. ( -9.20, z-score = -0.76, R) >droMoj3.scaffold_6540 842492 66 - 34148556 ----------ACAACAGCAACAGCGACAGCAACGUUAUAAUCACAAUCUGUGAUCUAAAUGACCUUUUCUAUUUCA ----------............((....))...(((((.(((((.....)))))....)))))............. ( -7.90, z-score = -0.68, R) >consensus ACAUGUAAUAUCAGUGUCAUAUGCAAAUGCAAUUCCCCUAUCACAAG_CGUGAUCUAAAUGACCUUCUUU______ ...............((((..(((....)))........(((((.....))))).....))))............. ( -6.76 = -7.25 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:22 2011