| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,253,293 – 18,253,404 |
| Length | 111 |
| Max. P | 0.834139 |
| Location | 18,253,293 – 18,253,404 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.90 |
| Shannon entropy | 0.42381 |
| G+C content | 0.57411 |
| Mean single sequence MFE | -41.32 |
| Consensus MFE | -22.80 |
| Energy contribution | -23.21 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18253293 111 - 27905053 GGAGGAGAGCACCAGGGGCAACGAUCCGGAGCCA------GUGGUGCCAACUGUCCAAUUCUACACGGCCACCUUUGACGAGAAGAAUGCCCAGGAGCAGCUGCUUUCCUCCUUCAU ((((((((((((((..(((..((...))..))).------.))))((...(((..((.((((.(.((..((....)).)).).))))))..)))..))....))))))))))..... ( -40.60, z-score = -1.51, R) >droSim1.chr3R_random 913286 111 - 1307089 GGAGGAGAGCACCAGGGGCAACGACCCGGAGCCA------GUGGUGCCCACUGUCCAAUUCUACACGGCCACUUUUGACGAGAAGAAUGCUCAGGAGCAGCUGCUUUCCUCCUUCAU (((((((((((.(.(((.......))).((((((------((((...))))))....(((((.(.((..((....)).)).).))))))))).......).)))))))))))..... ( -42.20, z-score = -1.89, R) >droSec1.super_0 18609109 111 - 21120651 GGAGGAGAGCACCCGGGGAAACGAUCCGGAGCCA------GUGGUGCCAACUGUCCAAUUCUACACGGCCACCUUUGACGAGAAGAAUGCCCAGGAGCAGCUGCUUUCCUCCUUCAU (((((((((((.(((((....)...)))).....------..(.(((...(((..((.((((.(.((..((....)).)).).))))))..)))..))).))))))))))))..... ( -39.20, z-score = -1.28, R) >droYak2.chr3R 19100716 111 - 28832112 GGAGGAGAGCACCAGGGGAAACGAUCCGGAGCCA------GUGGUGCCCACUGUCCAAUUUUACACGGCCACCUUUGACGAGAAGAAUGCCCAGGAGCAGCUGCUCUCCUCCUUCAU (((((((((((.(...(....)(.((((((..((------((((...)))))))))..........(((...((((.....))))...)))..))).).).)))))))))))..... ( -44.20, z-score = -2.58, R) >droEre2.scaffold_4820 646366 111 + 10470090 GGAGGAGAGCACCAGGGGAAACGAUCCAGAGCCU------GUGGUGCCCACUGUACAAUUCUACACGGCCACUUUUGAUGAGAAGAAUGCCCAGGAGCAGCUGCUCUCCUCCUUUAU (((((((((((.(...(((.....))).(..(((------(.((((((...((((......)))).)))..(((((....)))))...)))))))..).).)))))))))))..... ( -43.00, z-score = -2.77, R) >droAna3.scaffold_13340 14809582 111 - 23697760 GGAGGAGAGUACCAACGGCGCCGAGCCGGAGCCG------GUGGUGCCCACAGUUCAGUUUUAUACAGCCACCUUCGAUGAGCGGAAUGCCCAGGAGCAGUUGCUAUCCUCUUUCAU (((((((..((.((((((((((..((((....))------))))))))....((((...........((((.......)).))((.....))..)))).)))).))..))))))).. ( -39.00, z-score = -1.37, R) >dp4.chr2 16966863 117 + 30794189 CGAGGAGAGCACCAACAAGGCCGAGUCGGAGCCGGAGGCUGUGGUGCCCACCGUGCAGUUCUACACGGCCACCUUCGACGAGAGGAAUGCCCAGGAGCAGCUGCUCUCCUCCUUCAU .(((((((((((((....((((...(((....))).)))).)))))).......((((((((....(((...((((.....))))...)))....)).)))))))))))))...... ( -49.10, z-score = -1.64, R) >droPer1.super_0 6616520 117 - 11822988 CGAGGAGAGCACCAACAAGGCCGAGUCGGAGCCGGAGGCGGUGGUGCCCACCGUGCAGUUCUACACGGCCACCUUCGACGAGAGGAAUGCCCAGGAGCAGCUGCUCUCCUCCUUCAU .((((((((((.(.....(((((.((.(((((..(..(((((((...))))))).).))))))).)))))..((((.....))))..(((......)))).))))))))))...... ( -51.80, z-score = -2.22, R) >droWil1.scaffold_181089 2717463 111 - 12369635 CGAGGAGAGCACAAACGAAGCUGAGACAGAGCC------CGUGGUGCCCACUGUGCAAUUCUAUACGGCAACCUUCGAUGAACGUAAUGCCCAGGAGCAAUUGCUGUCCUCGUUCAU ((((((.((((....((((((((...))).(((------.((((...)))).(((........))))))...)))))..........(((......)))..)))).))))))..... ( -31.70, z-score = -0.66, R) >droMoj3.scaffold_6540 27384425 105 - 34148556 GGAGGAGAGCACUAGUUCCUCGGAUGCUGUG------------GUGCCCACCGUGCAGUUCUAUACGGCGACCUUUGACGAGCGCAAUGCCCAAGAACAGUUGCUUUCCUCCUUCAU (((((((((((((.((((...(((.((((((------------((....)))..)))))))).....(((..(......)..))).........)))))).)))))))))))..... ( -37.40, z-score = -2.05, R) >droVir3.scaffold_12855 1657725 105 - 10161210 GGAGGAGAGCACCAGCUCCUCGGAUGCUGUG------------GUGCCCACCGUGCAGUUCUAUACGGCCACCUUUGACGAACGCAAUGCCCAGGAGCAGUUGCUUUCGUCCUUUAU (((.(((((((.(.((((((.((.(((((((------------(((....(((((........))))).))))....)))...)))...)).)))))).).))))))).)))..... ( -39.80, z-score = -2.18, R) >droGri2.scaffold_14830 43337 108 - 6267026 UGAGGAGAGCACGAGCUCGUCGGAUGCUGUA---------GUUGUGCCCACUGUUCAAUUCUAUACGGCCACCUUUGACGAACGCAAUGCCCAGGAGCAGUUGCUCUCCUCCUUCAU .(((((((((((..((((((((((.((((((---------((((.((.....)).))))....))))))....))))))))..))..(((......)))).))))))))))...... ( -37.90, z-score = -2.19, R) >consensus GGAGGAGAGCACCAGCGGCACCGAUCCGGAGCC_______GUGGUGCCCACUGUGCAAUUCUACACGGCCACCUUUGACGAGAGGAAUGCCCAGGAGCAGCUGCUCUCCUCCUUCAU (((((((((((...............................((((((..................))).)))..............(((......)))..)))))))))))..... (-22.80 = -23.21 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:15 2011