| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,292,728 – 8,292,780 |
| Length | 52 |
| Max. P | 0.968434 |
| Location | 8,292,728 – 8,292,780 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 85.48 |
| Shannon entropy | 0.26443 |
| G+C content | 0.36394 |
| Mean single sequence MFE | -5.23 |
| Consensus MFE | -5.10 |
| Energy contribution | -5.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8292728 52 - 23011544 ----CCCGAAAAAAACAAACCGAU-CCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU ----....................-............((((((......)))))).. ( -5.10, z-score = -1.41, R) >droPer1.super_1 4931126 56 + 10282868 ACAGAAAAAAAAGCAUAAACCGAU-UCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU ........................-............((((((......)))))).. ( -5.10, z-score = -1.61, R) >dp4.chr4_group3 7820575 56 + 11692001 ACAGGAAAAAAAGCAUAAACCGAU-UCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU ...((((................)-))).........((((((......)))))).. ( -5.99, z-score = -1.08, R) >droAna3.scaffold_12916 10207839 51 + 16180835 -----CUCAAAAAAACAAACCGAU-UCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU -----...................-............((((((......)))))).. ( -5.10, z-score = -1.94, R) >droEre2.scaffold_4929 17202046 52 - 26641161 -----CCAGAAAAAACAAACCGAUCCCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU -----................................((((((......)))))).. ( -5.10, z-score = -1.80, R) >droYak2.chr2L 10930214 51 - 22324452 -----CCAGAAAAAGCAAACCGAU-CCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU -----...................-............((((((......)))))).. ( -5.10, z-score = -1.55, R) >droSim1.chr2L 8079894 51 - 22036055 -----CCCGAAAAAACAAACCGAA-CCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU -----...................-............((((((......)))))).. ( -5.10, z-score = -1.66, R) >consensus _____CCAAAAAAAACAAACCGAU_CCCCAAUAAUUAGAAAUCAAAGCCGGUUUCAU .....................................((((((......)))))).. ( -5.10 = -5.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:40 2011