Locus 11036

Sequence ID dm3.chr3R
Location 18,195,441 – 18,195,536
Length 95
Max. P 0.825561
window15162

overview

Window 2

Location 18,195,441 – 18,195,536
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 89.68
Shannon entropy 0.15978
G+C content 0.63714
Mean single sequence MFE -38.58
Consensus MFE -32.87
Energy contribution -34.49
Covariance contribution 1.62
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.82
SVM RNA-class probability 0.825561
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 18195441 95 - 27905053
AGCAGGCGGAAGAAAAGUGUGCAGCGAAGCCGACACCGGCAGCGCUGCACAUCUGCACCGCCGAAGGUCAGUUCUGCCGACCGCGACCGACAGAA
.((.(((((.(((....(((((((((..((((....))))..))))))))))))...)))))...((((.(.....).))))))........... ( -45.00, z-score =  -3.94, R)
>droSec1.super_0 18551418 95 - 21120651
AGCAGGCGGAAGAAAAGUGUGCAGCGAAGUCGGCGCCGGCAGCGCUGCACAGCUGCACCGCCGAAGGUCAGUUCUGCCGACCGCGACCGACAGAA
.((.(((((..(...(((((((((((..((((....))))..))))))))).)).).)))))...((((.(.....).))))))........... ( -43.10, z-score =  -1.80, R)
>droYak2.chr3R 19039284 87 - 28832112
AGCAGGCGGAAGAAAAGUGUGCAGCGAAUUCGACGCCGGCAGCGCUGC--------ACCGCCGAAGGUCAGUUGUGCCGACCGCGACCGACAGAA
....(((((..........(((((((...(((....)))...))))))--------))))))....(((.((((((.....)))))).))).... ( -32.40, z-score =  -0.62, R)
>droEre2.scaffold_4820 588074 87 + 10470090
AGCAGGCGGAAGAAACCUGUGCAGCGAAUUCGACGCCGGCAGCGCUGC--------ACCGCCGAAGGUCAGUUCUGUCGACCGCGACCGACAGAA
....(((((.((....)).(((((((...(((....)))...))))))--------)))))).........((((((((........)))))))) ( -33.80, z-score =  -1.04, R)
>consensus
AGCAGGCGGAAGAAAAGUGUGCAGCGAAGUCGACGCCGGCAGCGCUGC________ACCGCCGAAGGUCAGUUCUGCCGACCGCGACCGACAGAA
.((.(((((........(((((((((..((((....))))..)))))))))......)))))...((((.(.....).))))))........... (-32.87 = -34.49 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:08 2011