| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,185,204 – 18,185,294 |
| Length | 90 |
| Max. P | 0.966634 |
| Location | 18,185,204 – 18,185,294 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 62.37 |
| Shannon entropy | 0.71944 |
| G+C content | 0.45864 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -10.96 |
| Energy contribution | -10.63 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18185204 90 + 27905053 ---------------GCUGCUUUUGUAUUUAUGAGACAUAUCUAC---------UUAUUU--CUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCUGUGGACGCCAUCGUUU ---------------(((((....(((..((((...))))..)))---------......--..)))))((((.(((((((((((.....))))).......))))))..)))).. ( -27.11, z-score = -2.92, R) >droSim1.chr3R 17994278 90 + 27517382 ---------------GCUGCUUUCGUAUUUAUGACCCAUAUCUAC---------AUAUCU--UUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCCGUGGAUGCCAUCGUUU ---------------(((((....(((..((((...))))..)))---------......--..)))))((((.(((((((((((.....))))).......))))))..)))).. ( -24.61, z-score = -2.07, R) >droSec1.super_0 18541396 90 + 21120651 ---------------GCUGCUUUCGUAUUUAUGACCCAUAUCUAC---------UUAUCU--UUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCUGUGGAUGCCAUCGUUU ---------------(((((....(((..((((...))))..)))---------......--..)))))((((.(((((((((((.....))))).......))))))..)))).. ( -24.61, z-score = -2.36, R) >droYak2.chr3R 19028842 98 + 28832112 ---------------GCUGCUGUUGUAUUUAUUAU-CAUAUUUACGUCCCUCUUUUACUU--UUGCAGCACGACGUGUCUGGAAGGACUACUUCCCCGCCGUGGAUGCCAUCGUUU ---------------(((((....(((........-...................)))..--..))))).(.(((.((..(((((.....)))))..))))).)............ ( -21.43, z-score = -0.97, R) >droEre2.scaffold_4820 577699 98 - 10470090 ---------------GCUGCUGUUGUAUUGCUUCU-CAUAUUUAUGGCCCAUGUUCACUU--UUGCAGCACGACGCGUCUGGAAGGACUACUUCCCCGCUGUGGAUGCCAUCGUUU ---------------(((((....((...((...(-(((....)))).....))..))..--..)))))((((.(((((((((((.....))))).......))))))..)))).. ( -24.81, z-score = -0.33, R) >droAna3.scaffold_13340 9166379 100 + 23697760 GUUAUUUUCGCCAGCGAGAUAGUGUAACUAAUUCUAAAUAUUUAC------------U----UUCCAGCACGCCGAGUCUGGAAGGACUACUUCCCCGCCGUGGACGCCAUCGUGU ((((((((((....)))))....)))))................(------------(----((((((.((.....))))))))))..........(((.((((...)))).))). ( -23.20, z-score = -0.56, R) >dp4.chr2 14246361 76 + 30794189 --------------------------GUUAAACUUACAUUUUGAC------------CGA--UUGUAGCACGUCGCGUCUGGAAGGACUAUUUCCCCGCUGUGGACGCAAUUGUGU --------------------------((((((.......))))))------------...--.....(((((..(((((((((((.....))))).......))))))...))))) ( -17.01, z-score = 0.02, R) >droPer1.super_0 5629225 76 - 11822988 --------------------------GUUAAACUUAAAUUUUGAC------------CGA--UUGUAGCACGUCGCGUCUGGAAGGACUAUUUCCCCGCUGUGGACGCAAUUGUGU --------------------------((((((.......))))))------------...--.....(((((..(((((((((((.....))))).......))))))...))))) ( -17.01, z-score = -0.22, R) >triCas2.ChLG10 2317960 105 + 8806720 -----------UAUCCCUCCUUAUCUAUGACUUAAUUUUAUCAAUACUGAUUUAUUUUUAAAAUAUAGCGAGACGUGUAUGGAAAGAUUACUUUCCGGCAGUUGACGCGAUAGUAU -----------.........(((((.........((((((..((((......))))..))))))...(((.(((.(((.(((((((....)))))))))))))..))))))))... ( -20.00, z-score = -1.25, R) >droWil1.scaffold_181130 12331450 68 + 16660200 -------------------------------------AUAUACAU---------UGUGUC--UUGCAGCACGUCGUGUCUGGAAGGAUUACUUCCCAGCUGUGGAUGCCAUUGUUU -------------------------------------....(((.---------.(((((--(.(((((((.....))..(((((.....)))))..)))))))))))...))).. ( -17.10, z-score = -0.44, R) >consensus _______________GCUGCUUUUGUAUUAAUUAUACAUAUUUAC_________UUAUUU__UUGCAGCACGACGCGUCUGGAAGGACUACUUCCCCGCUGUGGACGCCAUCGUUU .....................................................................(((..(((((((((((.....))))).......))))))...))).. (-10.96 = -10.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:07 2011