| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,176,283 – 18,176,389 |
| Length | 106 |
| Max. P | 0.567189 |
| Location | 18,176,283 – 18,176,389 |
|---|---|
| Length | 106 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.56 |
| Shannon entropy | 0.69998 |
| G+C content | 0.47337 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -8.14 |
| Energy contribution | -9.31 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18176283 106 - 27905053 GCCAGAAGUCAGGCAAUUGUUUCGAUUGG-CCGGCCAUAAAUUCCCUAGCAUUUAUCUCGUACAGUUGUGCUGGCUGUUAAC---UAACAGCCGCCCA----------AGCCAUGCAAAU (((........)))..((((......(((-(.(((............(((((....((.....))..)))))(((((((...---.))))))))))..----------.)))).)))).. ( -29.30, z-score = -1.20, R) >droAna3.scaffold_13340 9157193 94 - 23697760 GGCAGGAGUCAGGCAAUUGUUUCGAUUGGCCCGGCCAUAAAU-------------UGUGGUACAGUUGUCCUGGCUGUUAUU---UAACAGCCGGCCA----------AGCCAUGCAAAU (((..(.(((((((((((((..((((((((...))))...))-------------))....))))))).)))(((((((...---.))))))))))).----------.)))........ ( -34.80, z-score = -2.14, R) >droEre2.scaffold_4820 568866 106 + 10470090 GCCAGAAGUCAGGCAAUUGUUUCGAUUGG-CCGGCCAUAAAUUCCCUAGCAUUUAUGUCGUACAGUUGUGCUGGCUGUUAAC---UAACAGCCGGCAA----------AGCCAUGCAAAU .......((..(((........((((((.-.((((.((((((........))))))))))..))))))(((((((((((...---.))))))))))).----------.)))..)).... ( -37.30, z-score = -2.97, R) >droYak2.chr3R 19019742 106 - 28832112 GCCAGAAGUCAGGCAAUUGUUUCGAUUGG-CCGGCCAUAAAUUCCCUACCAUUUGUGUCGUACAGUUGUGCUGGCUGUUAAC---UAACAGCCGGCCA----------AGCCAUGCAAAU (((........)))..((((.....((((-(((((.((((((........)))))))))((((....)))).(((((((...---.))))))))))))----------).....)))).. ( -36.40, z-score = -2.63, R) >droSec1.super_0 18531377 106 - 21120651 GCCAGAAGUCAGGCAAUUGUUUCGAUUGG-CCGGCCAUAAAUUCCCUAGCAUUUAUCUCGUACAGUUGUGCUGGCUGUUAAC---UAACAGCCGCCCA----------AGCCAUGCAAAU (((........)))..((((......(((-(.(((............(((((....((.....))..)))))(((((((...---.))))))))))..----------.)))).)))).. ( -29.30, z-score = -1.20, R) >droSim1.chr3R 17984304 106 - 27517382 GCCAGAAGUCAGGCAAUUGUUUCGAUUGG-CCGGCCAUAAAUUCCCUAGCAUUUAUCUCGUACAGUUGUGCUGGCUGUUAAC---UAACAGCCGCCCA----------AGCCAUGCAAAU (((........)))..((((......(((-(.(((............(((((....((.....))..)))))(((((((...---.))))))))))..----------.)))).)))).. ( -29.30, z-score = -1.20, R) >droPer1.super_0 3682553 117 + 11822988 GGCGCUAGUCAGGCAAUUGUUUCGAUUGGCUCGGCCGUAAAUUUCAUCGCAUUCAUGUGGUACAGUUGUGCAAGCUGUUAAC---UAACAGCGAUCCAGCAGGCCCCGAGCCUUGAAAAU ((((((((((((((....)))).)))))))..((((.........((((((....))))))...((((.(...((((((...---.))))))...))))).))))....)))........ ( -39.50, z-score = -2.02, R) >dp4.chr2 12329562 117 - 30794189 GGCGCUAGUCAGGCAAUUGUUUCGAUUGCCUCGGCCGUAAAUUUCAUCGCAUUCAUGUGGUACAGUUGUGCAAGCUGUUAAC---UAACAGCGAUCCAGCAGGCCCCGAGCCUUGAAAAU (((.......(((((((((...))))))))).((((.........((((((....))))))...((((.(...((((((...---.))))))...))))).))))....)))........ ( -38.80, z-score = -2.16, R) >droWil1.scaffold_181130 12322811 92 - 16660200 -UCAUAUAGUAGAAGAGUUUAGAGAUUGCCCAGACCAAAAGAGACCAGA-----GCAGAGCAGAGUCAGUUGCAAUUGCAAU---UGACAGCCAUAAAAUG------------------- -...(((.((...............((((.(................).-----))))......(((((((((....)))))---)))).)).))).....------------------- ( -14.39, z-score = -1.97, R) >droGri2.scaffold_15074 1311521 85 - 7742996 GUCCUUUGUGUGGCAAGCGAUGCUGUU---CAGUUUAAGCCCA-----------GUACAGU--AGUUGACCAGGCUGUUAACGAAUAAAAUCUAUACAACU------------------- .....((((((((...((..(((((..---(.......)..))-----------)))..))--.((((((......)))))).........))))))))..------------------- ( -17.20, z-score = 0.20, R) >consensus GCCAGAAGUCAGGCAAUUGUUUCGAUUGG_CCGGCCAUAAAUUCCCUAGCAUUUAUGUCGUACAGUUGUGCUGGCUGUUAAC___UAACAGCCGUCCA__________AGCCAUGCAAAU ...........(((........((((((..................................)))))).....(((((((.....))))))).................)))........ ( -8.14 = -9.31 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:06 2011