| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,169,423 – 18,169,525 |
| Length | 102 |
| Max. P | 0.814461 |
| Location | 18,169,423 – 18,169,525 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.46 |
| Shannon entropy | 0.42410 |
| G+C content | 0.41129 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -16.03 |
| Energy contribution | -15.90 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18169423 102 + 27905053 UCCACCGCUUUUCGGCCGAAAGGCGCAAAAGUGUGAAAUGGCCGAGUACGAGAGUGUUCAUAUAUAUAUA-UAUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..(((((....((((((....)))..(((((((.((((.....((((((....))))))(((((....))-))))))))))))))....))).....))))). ( -27.80, z-score = -1.94, R) >droSim1.chr3R 17977354 96 + 27517382 UCCACCGCUUUUCGGCCGAAAGGCGCAAAAGUGUGAAAUGGCCGAGUGCGAGAGUGUUCAUAUAU-------AUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..((((((..((((((((....((((....))))....)))))))).))((((((((......))-------))))))....................)))). ( -30.80, z-score = -2.73, R) >droSec1.super_0 18524528 96 + 21120651 UCCACCGCUUUUCGGCCGAAAGGCGCAAAAGUGUGAAAUGGCCGAGUGCGAGAGUGUUCAUAUAU-------AUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..((((((..((((((((....((((....))))....)))))))).))((((((((......))-------))))))....................)))). ( -30.80, z-score = -2.73, R) >droYak2.chr3R 19012670 103 + 28832112 UCCAUCGCUUUUCGGCCGAAAGGCGCAAAAGUGUGAAAUGGCCGAGUGCGAGAGUGUUCAUAUAUAUUUUCUAUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..((((((..((((((((....((((....))))....)))))))).))((((((((......))))))))...........................)))). ( -28.20, z-score = -1.58, R) >droEre2.scaffold_4820 562032 102 - 10470090 UCCACCGCUUUUUGGCCGAAAGGCGCAAAAGUGUGAAAUGGUCGAGUGCGAGAGUGUUCAUAUAUGUAUA-UAUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..((((((((((.((((....))).)))))))(.(((((.((((((..(....)..)))(((((....))-))).............))).))))).))))). ( -32.30, z-score = -3.28, R) >droAna3.scaffold_13340 9152119 91 + 23697760 UCCGCAGCUUUUCGGCUGGA-GGCGCAAAAGUGUGAAAUAGC----UCCUA---CGUACAUAUAAACAC----UUGUAUGUUUUUAUGACGAUUUUUUGGUGA ..(((((((....))))(((-(((((....)))).......)----)))..---(((.((((.(((((.----.....))))).)))))))........))). ( -19.41, z-score = 0.11, R) >dp4.chr2 12323066 78 + 30794189 UCAGCUGUUUUUCGGUUUAGGGGCGCCAAAGUGUGAAACUGUU---UGAGA----------------------GUGCAUAUUUGUAUGACGAUUUUUCGGCGA ...((((((((.((((((....((((....)))).))))))..---.))))----------------------(((((....)))))..........)))).. ( -15.30, z-score = 0.94, R) >consensus UCCACCGCUUUUCGGCCGAAAGGCGCAAAAGUGUGAAAUGGCCGAGUGCGAGAGUGUUCAUAUAU_______AUUUUCUAUUUUUAUGACGAUUUUUCGGUGA ..((((((...(((((((....((((....))))....)))))))..))).......................................(((....)))))). (-16.03 = -15.90 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:02 2011