| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,153,674 – 18,153,765 |
| Length | 91 |
| Max. P | 0.857873 |
| Location | 18,153,674 – 18,153,765 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Shannon entropy | 0.41636 |
| G+C content | 0.51783 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -11.55 |
| Energy contribution | -12.89 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18153674 91 - 27905053 CUGACGUCGUCUUUGUUU----CUGCGUUUCCGUUUGACAAUUGCCACGCAGUCGCCUGCAGCUAAAUUCCUUGGCGAUUGUCCUCGUCCUUCGU ..(((((.((..(((((.----..(((....)))..)))))..)).))(((((((((................)))))))))....)))...... ( -24.49, z-score = -2.29, R) >droPer1.super_0 3660816 84 + 11822988 CUGUCGCUGUCAUUGUUCUGGGCUGGCACUCGGUCUGCUACUAUAUCCGGACUGGGUAACGAUUCCUUCUAUGCACAUCUGCUC----------- ..((.(.((((((.(....(((.((..((((((((((..........))))))))))..))..)))..).))).))).).))..----------- ( -18.90, z-score = -0.01, R) >droEre2.scaffold_4820 542424 90 + 10470090 CUGACGUCGUCUUUGUUU----CUGCGUUUCCGUUUGACAAUUG-CACGCAGUCGCCUGCAGCUAAAUUCCUUGGCGAUUGCCCUCGUCCUUCGU ..((((..((..(((((.----..(((....)))..)))))..)-)..(((((((((................)))))))))...))))...... ( -26.59, z-score = -2.75, R) >droYak2.chr3R 18997046 90 - 28832112 CUGACGUCGUCUUUGUUU----CUGCGUUUCCGUUUGACAAUUG-CACGCAAUCGCCUGCAGCUAAAUUCCUUGGCGAUUGCCCUCGUCCUUCGU ..((((..((..(((((.----..(((....)))..)))))..)-)..(((((((((................)))))))))...))))...... ( -26.59, z-score = -3.20, R) >droSec1.super_0 18508939 90 - 21120651 CUGACAUCGUCUUUGUUU----CUGCGUUUCCGUUUGACAAUUG-CACGCAGUCGCCUGCAGCUAAAUUCCUUGGCGAUUGCCCUCGUCCUUCGU ..(((...((..(((((.----..(((....)))..)))))..)-)..(((((((((................)))))))))....)))...... ( -25.49, z-score = -2.66, R) >droSim1.chr3R 17960549 90 - 27517382 CUGACGUCGUCUUUGUUU----CUGCGUUUCCGUUUGACAAUUG-CACGCAGUCGCCUGCAGCUAAAUUCCUUGGCGAUUGCCCUCGUCCUUCGU ..((((..((..(((((.----..(((....)))..)))))..)-)..(((((((((................)))))))))...))))...... ( -26.59, z-score = -2.75, R) >consensus CUGACGUCGUCUUUGUUU____CUGCGUUUCCGUUUGACAAUUG_CACGCAGUCGCCUGCAGCUAAAUUCCUUGGCGAUUGCCCUCGUCCUUCGU ..(((.......(((((.......(((....)))..))))).......(((((((((................)))))))))....)))...... (-11.55 = -12.89 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:35:02 2011