| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,139,727 – 18,139,819 |
| Length | 92 |
| Max. P | 0.969140 |
| Location | 18,139,727 – 18,139,819 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.09 |
| Shannon entropy | 0.28250 |
| G+C content | 0.43362 |
| Mean single sequence MFE | -13.65 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18139727 92 - 27905053 GCCAUGAAAAGUUCCAUAAUUUGGAGCCAACUUCAAAGCAUUUCCUUGCCGCAUUCAAAACAAAAACUUUUCCCGAUCCCCUUUCCCACCCA- .....((((((((......(((((((....)))))))(((......)))...............))))))))....................- ( -13.50, z-score = -2.36, R) >droSim1.chr3R 17945152 93 - 27517382 GCCAUGAAAAGUUCCAUAAUUUGGAGCUAACUUCAAAGCAUUUCCUUGCCGCAUUCAAAACAAAAACUUUUCCCGAUCCCCCUUCCCCACCCG ((..((((.(((((((.....)))))))...))))..(((......))).))......................................... ( -14.20, z-score = -2.95, R) >droSec1.super_0 18495205 93 - 21120651 GCCAUGAAAAGUUCCAUAAUUUGGAGCCAACUUCAAAGCAUUUCCUUGCCGCAUUCAAAACAAAAACUUUUCCCGAUCCACCUUCCCCAGCCG .....((((((((......(((((((....)))))))(((......)))...............))))))))..................... ( -13.50, z-score = -1.82, R) >droEre2.scaffold_4820 528549 85 + 10470090 GCCAUGAAAAGUUCCAUAAUUUGGAGCCAACUUCAAAGCAUUUCCUUGCCGCAUUCAAAACAAAAACUUUUCCCGACCCCCCUCC-------- .....((((((((......(((((((....)))))))(((......)))...............)))))))).............-------- ( -13.50, z-score = -2.44, R) >droAna3.scaffold_13340 9121780 84 - 23697760 GCCAUAAAAAGUUCCAUAAUUCGGAGCCAACUUCAAAGCAUUUCCUAGCCGCAUUCAAAACAAAAACUUUUCCAAUGCCCAGCC--------- ..........(((((.......)))))....................((.(((((..(((........)))..)))))...)).--------- ( -8.70, z-score = -0.56, R) >dp4.chr2 12294630 85 - 30794189 GCCAUGAAAAGUUCUAUAAUUUGGAGGCAACUUCAAAGCAUUUCCUUGCCACAUUCAAAACAAAAACUUUCCCUGGUCUCUGUCG-------- ((((.(.((((((......(((((((....)))))))(((......)))...............)))))).).))))........-------- ( -18.50, z-score = -2.58, R) >consensus GCCAUGAAAAGUUCCAUAAUUUGGAGCCAACUUCAAAGCAUUUCCUUGCCGCAUUCAAAACAAAAACUUUUCCCGAUCCCCCUCC________ .....((((((((......(((((((....)))))))(((......)))...............))))))))..................... (-11.27 = -11.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:56 2011