| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,139,014 – 18,139,128 |
| Length | 114 |
| Max. P | 0.802792 |
| Location | 18,139,014 – 18,139,128 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 64.82 |
| Shannon entropy | 0.55139 |
| G+C content | 0.26466 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -8.30 |
| Energy contribution | -9.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18139014 114 - 27905053 CUUAAGUGUGCAUAUUAUAG----UUUUAUAUAUUAUCCUUAAAACUAAUUAAACGCAUUUUUAUUUGCAAAAUGAGUUAUAAAUUGAACUUGGUGUACUGUUUCUGAGUGCAUUGAG ...(((((((..((...(((----(((((...........))))))))..))..)))))))............................((..(((((((.......)))))))..)) ( -20.80, z-score = -0.96, R) >droSim1.chr3R 17944439 113 - 27517382 CUUAAAUUUCCACAUUAUAG----UUUUAUAUAUAGUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUUGCCAAAUUAGUUGUAAGUUGAACUUGGUGUACUUUUU-UGAGUGCAUCGAG .............((((((.----.......)))))).((((...((((((....(((........)))..))))))...)))).....((((((((((((...-.)))))))))))) ( -23.60, z-score = -3.23, R) >droSec1.super_0 18494513 107 - 21120651 -----------ACAUUAUAGUUUUUUUUAUAUAUAGUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUAACCAAAUGAAUUGUAAAUUGAACUUGGUGUACUUUUUCUGAGUGCAUCGAG -----------........((((..((((((....((..((((......))))..))...((((((.....)))))).))))))..))))(((((((((((.....))))))))))). ( -18.90, z-score = -2.03, R) >droYak2.chr3R 18981259 93 - 28832112 -------------------------UUCGAAUCUUAAGAUUAUUGUUUCUUAAGCUUAUUAAUUAUUGUAACAUAAACUAUGAGUGAUAACUUAAGUGAUUUUUCUGAGUGCAUCGAG -------------------------.((((..((((.((.....(((.((((((.((((((.((((.((.......)).)))).)))))))))))).)))...))))))....)))). ( -16.80, z-score = -0.98, R) >consensus ___________ACAUUAUAG____UUUUAUAUAUAAUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUUGCAAAAUGAAUUAUAAAUUGAACUUGGUGUACUUUUUCUGAGUGCAUCGAG .........................................................................................((((((((((((.....)))))))))))) ( -8.30 = -9.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:56 2011