| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,135,987 – 18,136,078 |
| Length | 91 |
| Max. P | 0.893601 |
| Location | 18,135,987 – 18,136,078 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.42570 |
| G+C content | 0.51075 |
| Mean single sequence MFE | -34.17 |
| Consensus MFE | -17.13 |
| Energy contribution | -17.77 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18135987 91 - 27905053 -------AAAAGCCAGCGAGACAUCCGGGAAAGUUCUGGCCAUUUCGGUG------------CUGCAGCUGCGUUUAUUAUUAAAUGUCUGCGGCGCCGCGUUGAGCUGC -------...(((((((((((...((((((...))))))...))))((((------------((((((..(((((((....)))))))))))))))))..)))).))).. ( -39.40, z-score = -3.08, R) >droSim1.chr3R 17941359 91 - 27517382 -------AAAAGCCAGCGAGACAUCCGGGAAAGUUCUGGCCAUUUCGGUG------------CUGCAGCUGCGUUUAUUAUUAAAUGUCUGUGGCGCCGCGUUGAGCUGC -------...(((((((((((...((((((...))))))...))))((((------------(..(((..(((((((....))))))))))..)))))..)))).))).. ( -36.90, z-score = -2.68, R) >droSec1.super_0 18491465 91 - 21120651 -------AAAAGCCAGCGAGACAUCCGGGAAAGUUCUGGCCAUUUCGGUG------------CUGCAACUGCGUUUAUUAUUAAAUGUCUGUGGCGCCGCGUUGAGCUGC -------...(((((((((((...((((((...))))))...))))((((------------(..((...(((((((....))))))).))..)))))..)))).))).. ( -34.00, z-score = -2.19, R) >droYak2.chr3R 18978111 91 - 28832112 -------AAAAGCCAGGGAGACAGCCGGGAAAGUUCUGGCCAUUUCGGUG------------CUGCAGCUGCGUUUAUUAUUAAAUGUCUGCGGCGCCGCGUUGAGCUGC -------...((((((.((((..(((((((...)))))))..))))((((------------((((((..(((((((....)))))))))))))))))...))).))).. ( -39.50, z-score = -2.68, R) >droEre2.scaffold_4820 524705 90 + 10470090 -------AAGAGCCAGGGAGACAUCCGGGAAAGUUCU-GCCAUUUCGGCG------------CUGCAGCUGCGUUUAUUAUUAAAUGUCUGCGGCGCCGCGUUGAGCUGC -------.....((..(((....))).))..(((((.-((.....(((((------------((((((..(((((((....)))))))))))))))))).)).))))).. ( -37.10, z-score = -2.05, R) >droAna3.scaffold_13340 9118150 82 - 23697760 -------AAAAGCCAUACAGACAUCCGGAAAA---------ACUUUGGCG------------CUGCAGCUGCGUUUAUUAUUAAAUGUCUGCGGCGCCACGUUGAGCUGC -------..................(((...(---------((..(((((------------((((((..(((((((....)))))))))))))))))).)))...))). ( -30.10, z-score = -2.87, R) >droWil1.scaffold_181130 12279641 110 - 16660200 CACACGAAAAGGCAUUUGAAAAAUUUUCGUGUAGAUAAAACACUUUGGAAAACAACAAGAGCCAAGAGCUGCGUUUGCCAUUAAACGUCUGCAUUGCCUUAUUGAGCUGC ....(((.((((((((((..........((((.......))))((((........))))...)))).((.(((((((....)))))))..))..)))))).)))...... ( -22.20, z-score = 0.19, R) >consensus _______AAAAGCCAGCGAGACAUCCGGGAAAGUUCUGGCCAUUUCGGUG____________CUGCAGCUGCGUUUAUUAUUAAAUGUCUGCGGCGCCGCGUUGAGCUGC ..........(((....((((...((((((...))))))...))))((((............((((((..(((((((....))))))))))))))))).......))).. (-17.13 = -17.77 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:55 2011