| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,110,567 – 18,110,655 |
| Length | 88 |
| Max. P | 0.639192 |
| Location | 18,110,567 – 18,110,655 |
|---|---|
| Length | 88 |
| Sequences | 11 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.53803 |
| G+C content | 0.45943 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -12.84 |
| Energy contribution | -11.97 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18110567 88 + 27905053 ---AAACUAAUGCAACAUUGUUUU--GU--CUUUAAUAGAUCCUGCGUGAUAUUCGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ---..(((..(((((((..(((..--((--((.....))))((((((.......)).))))))))))))))....))).(((.(....).))).. ( -22.60, z-score = -0.88, R) >droSim1.chr3R 17918014 88 + 27517382 ---AAACUAAUGCAACAUUGUUUC--GU--CUUUAACAGAUCCUGCGUGAUAUUCGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ---......((((..(.((((..(--(.--(((((((((.(((((((.......)).))))).)))))).....))).))..)))).)...)))) ( -24.50, z-score = -1.19, R) >droSec1.super_0 18468276 88 + 21120651 ---AAACUAAUGCAACAUUGUUUC--GU--CUUUAAUAGAUCCUGCGUGAUAUUCGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ---..(((..(((((((..(((..--((--((.....))))((((((.......)).))))))))))))))....))).(((.(....).))).. ( -22.70, z-score = -0.72, R) >droYak2.chr3R 18953967 88 + 28832112 ---AAACUAAUGCAACAUUGUUUC--AU--CUUUAAUAGAUCCUGCGUGAUAUUCGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ---..(((..(((((((.......--.(--((.....)))(((((((.......)).)))))..)))))))....))).(((.(....).))).. ( -22.50, z-score = -1.00, R) >droEre2.scaffold_4820 499864 88 - 10470090 ---AAACUAAUGCAACAUUGUUUC--AU--CUUUAAUAGAUCCUGCGUGAUAUUCGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ---..(((..(((((((.......--.(--((.....)))(((((((.......)).)))))..)))))))....))).(((.(....).))).. ( -22.50, z-score = -1.00, R) >droAna3.scaffold_13340 9095347 90 + 23697760 ---CGACUAAUGGCAUAAUUUAUUUUGU--CCUCAAUAGAUCUUGCGUGACAUCCGACAAGGACUAUUACAAAUGAGCCGAGGCGAAGGACGCAU ---.......................((--(((((((((.(((((((.(....))).))))).)))))........((....))).))))).... ( -19.70, z-score = -0.88, R) >dp4.chr2 12269408 90 + 30794189 ---AAACUAAUGCAACUUUGUUUUUGGU--CUUUUGCAGAUUCUGCGUGACAUACGUCAGGGUCUGUUGCAAAUGAGUCGCGGCGAGGGACGCAU ---......((((..((((((..(.(.(--(.(((((((((((((((((...)))).)))))))...)))))).)).).)..))))))...)))) ( -27.10, z-score = -1.22, R) >droPer1.super_0 3621185 89 - 11822988 ---AAACUAAUGCAACUUUGUUUU-GGU--CUUUUGCAGAUUCUGCGUGACAUACGUCAGGGUCUGUUGCAAAUGAGUCGCGGCGAGGGACGCAU ---......((((..((((((..(-(((--(.(((((((((((((((((...)))).)))))))...)))))).)).)))..))))))...)))) ( -28.90, z-score = -1.84, R) >droWil1.scaffold_181130 12250991 84 + 16660200 -----------AUCCUCGCAAUCCUAAUUAUUCUUUCAGAUCUUGCGUGACAUACGCCAAGGGCUGCUGCAAAUGAGUCGAGGCGAGGGACGCAU -----------.(((((((........(((((....(((..((((((((...)))).))))..))).....)))))......)))))))...... ( -23.24, z-score = -0.39, R) >droVir3.scaffold_13047 10850826 95 - 19223366 UUGAAUAUAAUAUAAAUAUGUUCUUAAUAAUGUUUGCAGAUCUUGCGGGACAUACGCCAGGGUCUACUGCAAAUGAGUCGUGGCGAGGGACGCAC ..(((((((.......)))))))........((((((((((((((((.......)).)))))))...)))))))........(((.....))).. ( -22.80, z-score = -0.87, R) >droMoj3.scaffold_6540 27802890 74 + 34148556 ---------------------UAUGAAUUUGUUUUGCAGAUCUUGCGGGACAUACGGCAGGGCCUGCUGCAGAUGAGUCGGGGCGAGGGACGAGC ---------------------.....((((((...((((..(((((.(......).)))))..)))).))))))..(((.........))).... ( -23.60, z-score = -1.58, R) >consensus ___AAACUAAUGCAACAUUGUUUU__GU__CUUUAACAGAUCCUGCGUGACAUACGACAGGGACUGUUGCAAAUGAGUCGCGGCGAAGGACGCAU ...................................((((.(((((((.......)).))))).))))...............(((.....))).. (-12.84 = -11.97 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:49 2011