| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,107,668 – 18,107,765 |
| Length | 97 |
| Max. P | 0.842039 |
| Location | 18,107,668 – 18,107,765 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 97.73 |
| Shannon entropy | 0.03978 |
| G+C content | 0.38144 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -21.28 |
| Energy contribution | -21.04 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18107668 97 + 27905053 ACAGAUAACCAAAUAUCCUGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUUCCGAAAUUGAUAAAUGCACAUGGCAAACAUGUGCAGU (((((((......))).))))(((...((((((........))))))......)))..................((((((((.....)))))))).. ( -22.70, z-score = -1.95, R) >droSim1.chr3R 17915161 97 + 27517382 UCAGAUAACCAAAUAUCCUGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUUCCGAAAUUGAUAAAUGCACAUGGCAAACAUGUGCAGU ..(((((............((....))((((((........)))))).....))))).................((((((((.....)))))))).. ( -21.80, z-score = -1.62, R) >droSec1.super_0 18465397 97 + 21120651 UCAGAUAACCAAAUAUCCUGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUUCCGAAAUUGAUAAAUGCACAUGGCAAACAUGUGCAGU ..(((((............((....))((((((........)))))).....))))).................((((((((.....)))))))).. ( -21.80, z-score = -1.62, R) >droYak2.chr3R 18950945 97 + 28832112 UCAGAUAACCAAAUAUCCGGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUGGCGAAAUUGAUAAAUGCAUAUGGCAAACAUGUGCAGU ((((....(((.(((((.(....)...((((((........))))))...)))))...))).....))))....((((((((.....)))))))).. ( -23.10, z-score = -1.22, R) >droEre2.scaffold_4820 496966 97 - 10470090 UCAGAUAACCAAAUAUCCUGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUUCCGAAAUUGAUAAAUGCAUAUGGCAAACAUGUGCAGU ..(((((............((....))((((((........)))))).....))))).................((((((((.....)))))))).. ( -19.90, z-score = -1.06, R) >consensus UCAGAUAACCAAAUAUCCUGUGACCACAAGGCAAAGAUUUAUGCCUUCAAGAUGUCUAUUCCGAAAUUGAUAAAUGCACAUGGCAAACAUGUGCAGU ..(((((............((....))((((((........)))))).....))))).................((((((((.....)))))))).. (-21.28 = -21.04 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:48 2011