| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,096,951 – 18,097,043 |
| Length | 92 |
| Max. P | 0.857942 |
| Location | 18,096,951 – 18,097,043 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.96 |
| Shannon entropy | 0.41914 |
| G+C content | 0.56759 |
| Mean single sequence MFE | -38.79 |
| Consensus MFE | -16.65 |
| Energy contribution | -18.46 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18096951 92 + 27905053 CCCACGCAACAAGCGUUUAGCCACGCCCA----------------CACCCAUUGGUUGGGCGUGGAAGGGAUCAGG----UCCUGCUGUGUG--CGAAAAUUUCGCAUAAUUGC (((((((.....))))....(((((((((----------------.(((....))))))))))))..)))......----....((..((((--(((.....)))))))...)) ( -39.60, z-score = -3.45, R) >droSim1.chr3R 17904546 92 + 27517382 CCCACGCAACAAGCGUUUAGCCACGCCCA----------------CUCCCAUUGGGAGGGCGUGGAAGGGAUCAGG----UCCUGCUGUGUG--CGAAAAUUUCGCAUAAUUGC (((((((.....))))....((((((((.----------------.((((...))))))))))))..)))......----....((..((((--(((.....)))))))...)) ( -39.70, z-score = -3.38, R) >droSec1.super_0 18454773 92 + 21120651 CCCACGCAACAAGCGUUUAGCCACGCCCA----------------CUCCCAUUGGGAGGGCGUGGAAGGGAUCAGG----UCCUGCUGUGUG--CGAAAAUUUCGCAUAAUUGC (((((((.....))))....((((((((.----------------.((((...))))))))))))..)))......----....((..((((--(((.....)))))))...)) ( -39.70, z-score = -3.38, R) >droYak2.chr3R 18940000 96 + 28832112 CCCACGCAACAAGCGUUUAGCCACGCCCA----------------CUCGCAUUGGGAGGGCGUGGAAGGGAUCAGGCAGGUCCUGCUGUGUG--CGAAAAUUUCGCAUAAUUGC (((((((.....))))....((((((((.----------------(((.....))).))))))))..)))....(((((...))))).((((--(((.....)))))))..... ( -41.20, z-score = -2.98, R) >droEre2.scaffold_4820 481064 92 - 10470090 CCCACGCAACAAGCGUUUAGCCACGCCCA----------------CUCCCAUUGGGAGGGCGUGGAAGGGAUCAGG----UCCUGCUGUGUG--CGAAAAUUUCGCAUAAUUGC (((((((.....))))....((((((((.----------------.((((...))))))))))))..)))......----....((..((((--(((.....)))))))...)) ( -39.70, z-score = -3.38, R) >droAna3.scaffold_13340 9082640 87 + 23697760 CCCACGCAACAAGCGUUUAGCCACGCCCC----------------AUCCCUUUGGGCGGGC----AGAGCACUGCA-----CCCGCUGUGUG--CGAAAAUUUCGCAUAAUUGC .....(((....(.((((.(((.(((((.----------------........))))))))----.)))).)))).-----...((..((((--(((.....)))))))...)) ( -30.00, z-score = -1.54, R) >dp4.chr2 12255198 114 + 30794189 CCCCUGCAACAAGCGUUUAGCCACGCCCCGGCCACUGUCAAACCGCCCUUUUUGGUGGAUCGUAGGGGUGGGGGAAUCGAUCCAGCUGUGUGUGCGAAAAUUUCGCAUAAUUGC ((((..(.....((((......))))((((((....)))...(((((......)))))......))))..))))..........((....(((((((.....)))))))...)) ( -39.80, z-score = -0.76, R) >droPer1.super_3653 807 114 - 2484 CCCCUGCAACAAGCGUUUAGCCACGCCCCGGCCACUGUCAAACCGCCCUUUUUGGUGGAGAGGGGCGGGGAUGGAUUCGAUCCAGCUGUGUGUGCGAAAUUUUCGCUUAAUUGC .....((((.(((((.....((((((..((((....(((...(((((((((((....))))))))))).)))((((...)))).)))).))))).).......)))))..)))) ( -40.60, z-score = -0.71, R) >consensus CCCACGCAACAAGCGUUUAGCCACGCCCA________________CUCCCAUUGGGAGGGCGUGGAAGGGAUCAGG____UCCUGCUGUGUG__CGAAAAUUUCGCAUAAUUGC (((((((.....))))....((((((((.............................))))))))..)))..............((..((((..(((.....)))))))...)) (-16.65 = -18.46 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:47 2011