| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,077,835 – 18,077,891 |
| Length | 56 |
| Max. P | 0.587765 |
| Location | 18,077,835 – 18,077,891 |
|---|---|
| Length | 56 |
| Sequences | 8 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 72.70 |
| Shannon entropy | 0.56473 |
| G+C content | 0.41965 |
| Mean single sequence MFE | -10.01 |
| Consensus MFE | -4.61 |
| Energy contribution | -5.49 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18077835 56 - 27905053 CAAUCAGCAGAUGAGAU-AAGUUCUCUUAUCUAGUU-CAGGCCGUCCUUUUACACAGC ......((((((((((.-......)))))))).((.-.(((....)))...))...)) ( -9.60, z-score = -0.85, R) >droEre2.scaffold_4820 461714 56 + 10470090 CAAUCAGCAGAUGAGAU-AAGUUCUCUUAUCUAGUU-CAGGCCGUCCUUGUACACGGC .........((..((((-(((....)))))))...)-)..(((((........))))) ( -14.00, z-score = -1.76, R) >droYak2.chr3R 18918895 56 - 28832112 CAAUCAGCAGAUGAGAU-AAGUUCUCUUAUCUAGUU-CAGGCCGUCCUUUUACACAGC ......((((((((((.-......)))))))).((.-.(((....)))...))...)) ( -9.60, z-score = -0.85, R) >droSec1.super_0 18436367 56 - 21120651 CAAUCAGCAGAUGAGAU-AAGUUCUCUUAUCUAGUU-CAGGCCGUCCUUUUACACAGC ......((((((((((.-......)))))))).((.-.(((....)))...))...)) ( -9.60, z-score = -0.85, R) >droSim1.chr3R 17884827 56 - 27517382 CAAUCAGCAGAUGAGAU-AAGUUCUCUUAUCUAGUU-CAGGCCGUCCUUUUACACAGC ......((((((((((.-......)))))))).((.-.(((....)))...))...)) ( -9.60, z-score = -0.85, R) >dp4.Unknown_singleton_3255 13171 55 - 14460 CAAUCAGCAGAUGAGAUAAAACUUUGCUCUCUAGUUGCACGCCACUUUCACCCCC--- ......((((..(((((((....))).))))...)))).................--- ( -7.90, z-score = -0.93, R) >droAna3.scaffold_13340 9064627 51 - 23697760 CAAUCAGCAGAUGAGAU-AAGUUCCCUUAUCUGUGU-CUCAUUUUCGUUUCGC----- ......(((((((((..-.......)))))))))..-................----- ( -10.20, z-score = -1.89, R) >apiMel3.GroupUn 20233024 51 - 399230636 ---UAAGAAAA--AGAU-AGGCAUUCUUAUCUAUUU-CUAUUCAGUUAAGUACUUGCC ---..(((((.--((((-(((....))))))).)))-))................... ( -9.60, z-score = -1.78, R) >consensus CAAUCAGCAGAUGAGAU_AAGUUCUCUUAUCUAGUU_CAGGCCGUCCUUUUACACAGC ........((((((((........)))))))).......................... ( -4.61 = -5.49 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:42 2011