| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,077,464 – 18,077,556 |
| Length | 92 |
| Max. P | 0.976939 |
| Location | 18,077,464 – 18,077,556 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.14 |
| Shannon entropy | 0.31671 |
| G+C content | 0.37821 |
| Mean single sequence MFE | -14.56 |
| Consensus MFE | -9.51 |
| Energy contribution | -10.13 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18077464 92 - 27905053 UUCGCAAUCCUUUCACAC--------ACACACACACUUAAAUAUAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((.....(((((...--------............((((((((..(((......)))..))))))))...(((....))).....)))))))))).. ( -16.70, z-score = -3.64, R) >droSim1.chr3R 17884470 98 - 27517382 UUCGCAAUCCUUUCACACAA--ACUCACACACACACUUUAAUACAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((...............--......................(((((((......)))..)))).(((((.(((....))).....)))))))))).. ( -13.70, z-score = -2.44, R) >droSec1.super_0 18436014 98 - 21120651 UUCGCAAUCCUUUCACACAA--ACUCACACACACACUUAAAUAUAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAC (((((.....(((((.....--................((((((((..(((......)))..))))))))...(((....))).....)))))))))).. ( -16.70, z-score = -3.80, R) >droYak2.chr3R 18918536 100 - 28832112 UUCGCAAUCCUUUCACACAAAAACACACACACACAUUUAAAUAUAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((.....(((((.......................((((((((..(((......)))..))))))))...(((....))).....)))))))))).. ( -16.70, z-score = -3.51, R) >droEre2.scaffold_4820 461362 94 + 10470090 UUCGCAAUCCUUUCACACAA------ACACACACACUUAAAUACAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((...............------..................(((((((......)))..)))).(((((.(((....))).....)))))))))).. ( -13.70, z-score = -2.29, R) >droAna3.scaffold_13340 9064433 82 - 23697760 UUCGCAAUCCUUUCACAC--------ACAAGGGUACGCGCAUACAGUCACAAG----------UAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((.((((((......--------..))))))..((((((((........)----------))).......))))................))))).. ( -16.61, z-score = -1.95, R) >droWil1.scaffold_181130 12216865 83 - 16660200 UUUGCAAUCCUUUUACCCA------CACACACACACUUAUAAAUACACGCAUA----------UAUAUUUCACGCGCCAACGC-AAUUUGAAAGUGAAAU ...................------........(((((.(((((....((...----------..........))((....))-.))))).))))).... ( -7.82, z-score = -0.97, R) >consensus UUCGCAAUCCUUUCACACAA_____CACACACACACUUAAAUAUAUACGCAUACAUUUGCAAGUAUAUUUCACGCGCCAACGCAAAUUUGAAAGCGAAAU (((((...........................................(((......))).......(((((.(((....))).....)))))))))).. ( -9.51 = -10.13 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:42 2011