Sequence ID | dm3.chr3R |
---|---|
Location | 18,072,348 – 18,072,413 |
Length | 65 |
Max. P | 0.580739 |
Location | 18,072,348 – 18,072,413 |
---|---|
Length | 65 |
Sequences | 5 |
Columns | 65 |
Reading direction | forward |
Mean pairwise identity | 63.85 |
Shannon entropy | 0.67353 |
G+C content | 0.37544 |
Mean single sequence MFE | -13.37 |
Consensus MFE | -6.72 |
Energy contribution | -5.92 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.68 |
Mean z-score | -0.54 |
Structure conservation index | 0.50 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.580739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18072348 65 + 27905053 UUAAAAAGAUCCCAUUCUUUGGAAUCACCAAAGAAGGUGGGAAUCUGUAUUUUAGGCAGGGUUGG .........(((((((((((((.....)))))))..)))))).(((((.......)))))..... ( -20.00, z-score = -2.44, R) >droSim1.chr2h_random 793290 65 + 3178526 GAGAAAAAGUCCAACUCUUUUUCUUCUUCAGUAAAGGUGGGAACUUGUAUUUUUGGUAAUACUUU (((((((((.......))))))))).........((((....))))(((((......)))))... ( -10.00, z-score = 0.40, R) >droSec1.super_80 44630 65 + 135508 AAGAAUAAGUCCCACUAUUUGACUUCUCCAGUAAAGGUAGGAACUUGUAUUUUUGGUUAUACAGG .........(((.(((.....(((.....)))...))).))).(((((((........))))))) ( -9.70, z-score = 0.78, R) >droEre2.scaffold_4784 616793 65 - 25762168 GAGAAUAAUUCCCAUUCUUUUCCUUCUCCAGUAAAGGUGGGAACUUGUAUUUUUGGUAAUACAGG ........(((((((.((((.(........).)))))))))))((((((((......)))))))) ( -15.80, z-score = -1.40, R) >triCas2.singleUn_1817 15298 58 - 22356 CUGAAUGCUAACCAUUUUUCGUAUGCACCGUCGAAAGUGGGCAAGUCAAUUUUGGGUA------- ...........(((.........(((.(((.(....))))))).........)))...------- ( -11.37, z-score = -0.05, R) >consensus GAGAAUAAGUCCCAUUCUUUGUCUUCUCCAGUAAAGGUGGGAACUUGUAUUUUUGGUAAUACAGG (((((((((((((((.((((............))))))))).))))..))))))........... ( -6.72 = -5.92 + -0.80)
Location | 18,072,348 – 18,072,413 |
---|---|
Length | 65 |
Sequences | 5 |
Columns | 65 |
Reading direction | reverse |
Mean pairwise identity | 63.85 |
Shannon entropy | 0.67353 |
G+C content | 0.37544 |
Mean single sequence MFE | -11.90 |
Consensus MFE | -4.76 |
Energy contribution | -4.20 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.64 |
Mean z-score | -0.99 |
Structure conservation index | 0.40 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.518681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18072348 65 - 27905053 CCAACCCUGCCUAAAAUACAGAUUCCCACCUUCUUUGGUGAUUCCAAAGAAUGGGAUCUUUUUAA ...........(((((...((((.((((..((((((((.....))))))))))))))))))))). ( -17.80, z-score = -3.38, R) >droSim1.chr2h_random 793290 65 - 3178526 AAAGUAUUACCAAAAAUACAAGUUCCCACCUUUACUGAAGAAGAAAAAGAGUUGGACUUUUUCUC ...(((((......)))))((((.((.((((((.((.....))..)))).)).))))))...... ( -8.70, z-score = -0.08, R) >droSec1.super_80 44630 65 - 135508 CCUGUAUAACCAAAAAUACAAGUUCCUACCUUUACUGGAGAAGUCAAAUAGUGGGACUUAUUCUU ...((((........))))((((.(((((..(((((.....)))..))..)))))))))...... ( -10.50, z-score = -0.07, R) >droEre2.scaffold_4784 616793 65 + 25762168 CCUGUAUUACCAAAAAUACAAGUUCCCACCUUUACUGGAGAAGGAAAAGAAUGGGAAUUAUUCUC ..((((((......))))))(((((((((((((......))))).......))))))))...... ( -15.21, z-score = -1.68, R) >triCas2.singleUn_1817 15298 58 + 22356 -------UACCCAAAAUUGACUUGCCCACUUUCGACGGUGCAUACGAAAAAUGGUUAGCAUUCAG -------..........(((..((((((.(((((..........)))))..)))...))).))). ( -7.30, z-score = 0.26, R) >consensus CCAGUAUUACCAAAAAUACAAGUUCCCACCUUUACUGGAGAAGACAAAGAAUGGGAAUUAUUCUC ...................(((((((...((((............))))...)))))))...... ( -4.76 = -4.20 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:41 2011