| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,064,875 – 18,064,984 |
| Length | 109 |
| Max. P | 0.774217 |
| Location | 18,064,875 – 18,064,984 |
|---|---|
| Length | 109 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.01 |
| Shannon entropy | 0.57947 |
| G+C content | 0.51773 |
| Mean single sequence MFE | -32.96 |
| Consensus MFE | -14.73 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18064875 109 + 27905053 -AUUUAAAGUUCGACGUCCACAAAUUUGCACGAGGUCGAGAGCGAGUGUCGAGAACAUGCCAAAAG----UGGGCGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -........((((((.((..((....))...)).)))))).(((.((((((......((((.....----..)))).))).)))((((((((((...))))))))))..)))..-- ( -30.00, z-score = -0.54, R) >droSim1.chr3R 17880969 109 + 27517382 -AUUUAAAGUUCGACGCCCACAAAUUUGCACGAGGUCGAGAGCGAGUGUCGAGAACAUGCCAAAAG----UGGGCGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -.......(.(((.(((((((....((((.(........).))))((((.....)))).......)----)))))).))).)..((((((((((...)))))))))).......-- ( -31.90, z-score = -1.00, R) >droEre2.scaffold_4820 457758 109 - 10470090 -AUUUAAAGUUCGACGCCCACAAAUUUGCACGAGGUCGAGAGCGAGGGUCGAGAACAUGCCAAAAG----UGGGCGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -.......(.(((.(((((((...(((((.(........).)))))(((.........)))....)----)))))).))).)..((((((((((...)))))))))).......-- ( -32.90, z-score = -1.22, R) >droYak2.chr3R 18915001 109 + 28832112 -AUUUAAAGUUCGACGCCCACAAAUUUGCACGAGGUCGAGAGCGAGAGGCGGGAACAUGCCAAAAG----UGGGCGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -.......(.(((.(((((((...(((((.(........).))))).((((......))))....)----)))))).))).)..((((((((((...)))))))))).......-- ( -37.30, z-score = -2.45, R) >droAna3.scaffold_13340 9060999 91 + 23697760 -AUUUUAAGUUCGACGCCCACAAAUUUACACGACG------------------AGCAUGCCAAAAG----UGGGCGGUGGUCGCAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -.......(..((.(((((((..............------------------............)----)))))).))..)(((.((((((((...))))))))....)))..-- ( -26.47, z-score = -0.88, R) >dp4.Unknown_singleton_3255 7366 114 + 14460 AUUUAAAGUUUCAACGCCCACAAAUUUGCACACAGCGAAGGUGGGGGUGGGUGGGGGCGAGGGGGACGGCUGUGGGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- .......((..(.((.(((((...(((((.....))))).))))).)).....)..))...(....)..((((((.....))))))((((((((...)))))))).........-- ( -42.70, z-score = -2.83, R) >droPer1.super_0 3579787 105 - 11822988 AUUUAAAGUUUCAACGCCCACAAAUUUACACACAGCGAAGGUGGGGGUGGGUGUGGGCGGG---------UGUGGGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- ..............((((((((......(((...((....))....)))..)))))))).(---------(((.((....))..((((((((((...))))))))))...))))-- ( -40.10, z-score = -3.08, R) >droWil1.scaffold_181130 12213152 89 + 16660200 -AUUUAAAGUGCUACGCCCACAAAUUUACACAAACU-----------------GGCACGCCAAGA-------GGCGGUAUCCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC-- -.......((((...(((..................-----------------)))..((((...-------.(((((.(((...))).)))))....))))........))))-- ( -26.27, z-score = -2.15, R) >droVir3.scaffold_13047 10814375 97 - 19223366 -CUGCUGCUGCUGUUGCCCACAAAUUUACACACAGGCA-----------UGUCGGCACGCCAAGG-------GGCGGUGUUCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCACAC -.......(((((.((((................))))-----------...)))))((((....-------))))((((....((((((((((...))))))))))...)))).. ( -31.99, z-score = -0.16, R) >droMoj3.scaffold_6540 27762390 94 + 34148556 ----CUGCUGCUGCUGCCCACAAAUUUACACACAGGCA-----------UGUUGGCACGCCAAGG-------GGCGGUGUUCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCACAC ----.((((...((((((................))))-----------.)).))))((((....-------))))((((....((((((((((...))))))))))...)))).. ( -29.99, z-score = 0.14, R) >consensus _AUUUAAAGUUCGACGCCCACAAAUUUACACAAAGUCAAG___G_G___CGUGAGCACGCCAAAAG____UGGGCGGUGACCACAGGAAGCCGCAAAGUGGCUUUUUAAUGCAC__ ...............((........................................((((...........))))........((((((((((...))))))))))...)).... (-14.73 = -14.47 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:39 2011