| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,064,189 – 18,064,318 |
| Length | 129 |
| Max. P | 0.605772 |
| Location | 18,064,189 – 18,064,318 |
|---|---|
| Length | 129 |
| Sequences | 10 |
| Columns | 162 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.39158 |
| G+C content | 0.34559 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -17.79 |
| Energy contribution | -17.44 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18064189 129 + 27905053 -----------------------CAGAAA--UGCGAGGAAUAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-GGGCCAUGAAAAUCGAG------- -----------------------......--(((........))).(((.(((((((.......((((((.....))))))...))))))).)))(((....(((((((((((.((........)).))))))))))-).....)))........------- ( -29.60, z-score = -1.84, R) >droSec1.super_0 18431825 129 + 21120651 -----------------------CAGAAA--UGCGAGGAAUAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-GGGCCAUGAAAAUCGAG------- -----------------------......--(((........))).(((.(((((((.......((((((.....))))))...))))))).)))(((....(((((((((((.((........)).))))))))))-).....)))........------- ( -29.60, z-score = -1.84, R) >droSim1.chr3R 17880304 129 + 27517382 -----------------------CAGAAA--UGCGAGGAAUAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-GGGCCAUGAAAAUCGAG------- -----------------------......--(((........))).(((.(((((((.......((((((.....))))))...))))))).)))(((....(((((((((((.((........)).))))))))))-).....)))........------- ( -29.60, z-score = -1.84, R) >droEre2.scaffold_4820 457075 129 - 10470090 -----------------------CAGAAA--UGCGAGGAAUAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCCCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-GGGCCAUGAAAAUCGAG------- -----------------------......--..(((...((.((.((((.(((((((.......((((((.....))))))...))))))).))))......(((((((((((.((........)).))))))))))-).)).)).....)))..------- ( -31.90, z-score = -2.53, R) >droYak2.chr3R 18914285 129 + 28832112 -----------------------CAGAAA--UGCGAGGAAUAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-GGGCCAUGAAAAUCGAG------- -----------------------......--(((........))).(((.(((((((.......((((((.....))))))...))))))).)))(((....(((((((((((.((........)).))))))))))-).....)))........------- ( -29.60, z-score = -1.84, R) >droAna3.scaffold_13340 9060294 151 + 23697760 CAGGCUGAAAAACAUAGAAUCGGGAUGAA--GGAGAAACACAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA-UGGCCAUAAGGAUAUA-------- ..((((.......................--...........((.((((.(((((((.......((((((.....))))))...))))))).))))..))...((((((((((.((........)).))))))))))-.))))...........-------- ( -31.30, z-score = -1.11, R) >droPer1.super_0 3579166 134 - 11822988 -------------------CAGACACGAAA-GAACUAGGACUCUAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUUGGGGG-CGUACACGUAGGCGGAG------- -------------------......(....-)........((((((.((((((((((((.((((((....)))))).)))))))........(((..(((((.............)))))..))))))))))))))(-(.((....)).))....------- ( -27.02, z-score = -1.05, R) >droWil1.scaffold_181130 12212381 138 + 16660200 -----------------------CAGCAACUGGCAAGCCACAGCAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCAUGGGCCGAAACGAAACGAACUCAAG -----------------------.....(((((((.(((......)))......-.(((.....((((((.....))))))....)))....))).))))...((((((((((.((........)).))))))))))((((.((........))..)))).. ( -30.60, z-score = -1.56, R) >droVir3.scaffold_13047 10813749 135 - 19223366 ------------GGGAAAGUCAGCGAAAA--AAGAGCGCACGGCAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGUGGCA---GCAGUAUGGGCAG--------- ------------......(((.(((....--.....)))..(.((.((((((..-.(((.....((((((.....))))))....)))....(((..(((((.............)))))..))))))))).)).).---........)))..--------- ( -26.82, z-score = -0.03, R) >droMoj3.scaffold_6540 27761690 139 + 34148556 ------------GAGAGAGUCAGCGAAAA--AAGAGAACACGGCAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGUGGUA---GGCAGACGGACGGACGG----- ------------......(((.((.....--..((((.....((.((((.((((-.(((.....((((((.....))))))....)))))))))))..)).....))))......(((((((((.....))))))))---))).)))..........----- ( -30.30, z-score = -1.72, R) >consensus _______________________CAGAAA__UGCGAGGAACAGCAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCA_GGGCCAUGAAAAUCGAG_______ ..........................................((..((((((....(((.....((((((.....))))))....)))....(((..(((((.............)))))..)))))))))...)).......................... (-17.79 = -17.44 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:39 2011