| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,053,493 – 18,053,634 |
| Length | 141 |
| Max. P | 0.685819 |
| Location | 18,053,493 – 18,053,634 |
|---|---|
| Length | 141 |
| Sequences | 6 |
| Columns | 149 |
| Reading direction | forward |
| Mean pairwise identity | 60.33 |
| Shannon entropy | 0.69988 |
| G+C content | 0.43826 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -10.93 |
| Energy contribution | -9.13 |
| Covariance contribution | -1.80 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18053493 141 + 27905053 ----AGUAUCU-UAUACUUGGCUUUGUCCUAUGUGGUUGAGUUACUGCAGUUUUCUUUUACUUAUAUCCCAGUG---GCACCCUGUAGCUUAAUCGUUUUUCCCGCUCUAUUGAGCCCUCUCAACACGCCUUACCCUUAAAGACCCCUA ----(((((..-.))))).(((((((......(((((((((...((((((.......(((((........))))---)....))))))................((((....))))...)))))).)))........))))).)).... ( -25.64, z-score = -0.91, R) >droEre2.scaffold_4820 447639 130 - 10470090 ----AGUAUCU-UGUACUUGGCUUUGUCUUAUGCGGUUGAGUUACUACAGUUUUUCC--------AGCCCAGCG---GCACCCUGUGGCUUAAUCGUUUUUCCCGCUCUAUCGA---CCCUCUGCCCUCAGUACCCCUAAGAACCCCUA ----....(((-((((((.(((...(((....((((..(((..((....))..))).--------(((((((.(---....)))).))))............))))......))---).....)))...)))))....))))....... ( -28.10, z-score = -0.76, R) >droYak2.chr3R 18904774 114 + 28832112 ----AGUGUCC-UAUACUUGGCUUUGUCUUAUGUGGUUGAGUUACCACAGUUUUUC---------AGCCCAGUU---GCACCCUGUAGCUUAAUCGUUUUUCCCGCUCUAUCGA---CCCCCUA-----AGAACCCCUA---------- ----.......-....(((((....(((...((.(((((((..((....))..)))---------))))))(((---((.....))))).......................))---)...)))-----))........---------- ( -21.20, z-score = -1.04, R) >droSec1.super_0 18422651 111 + 21120651 ----AGUAUCU-UAUACUUGGCUUUGUCCUAUGUGGUUGAGUUACUGCAGUUUGAGUUU-UUUUUAGCACAGUG---GCACCCUGUAGCUUAAUCGUUUUUCCCGUUCUAAGAA----UCCCUA------------------------- ----.......-....(((((...((....(..(((((((((((((((...(((.(((.-.....))).)))..---)))....))))))))))))..)....))..)))))..----......------------------------- ( -20.60, z-score = -0.01, R) >droSim1.chr3R 17869659 114 + 27517382 ----AGUAUCU-UAUACUUGGCUUUGUCCUAUGUGGUUGAGUUACUGCAGUUUGAGUUU-UUUUUAGCCCAGUGCUGGCACCCUGUAGCUUAAUCGUUUUUCCCGCUCUAAGGA----CCCCUA------------------------- ----(((((..-.))))).((....(((((..((((((((((((((((((((((.(((.-.....))).))).))).)))....))))))))).........))))....))))----).))..------------------------- ( -24.00, z-score = 0.07, R) >droVir3.scaffold_13047 10803459 136 - 19223366 AAAAUCUAUUUGUAGAUUUUAUUAUUAUUUUUGCAGUGGCGACAGUUCCGCCUCUUUUUGCGUGUCUCCUCACAAU-GUUGCCGUUGUUGUUGUCGUUUUUGUUACUCUUGGCAUGCCAUUCCAGCCUGUAGAACAA------------ ((((((((....))))))))........((((((((.(((((((.....((........))(((......)))..)-))))))...((((..((.((...(((((....))))).)).))..))))))))))))...------------ ( -33.00, z-score = -2.73, R) >consensus ____AGUAUCU_UAUACUUGGCUUUGUCCUAUGUGGUUGAGUUACUGCAGUUUUUCUUU__UU_UAGCCCAGUG___GCACCCUGUAGCUUAAUCGUUUUUCCCGCUCUAUGGA___CCCCCUA________ACCC_____________ .................................((((((((((((.......................................))))))))))))..................................................... (-10.93 = -9.13 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:37 2011