| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,049,043 – 18,049,133 |
| Length | 90 |
| Max. P | 0.919453 |
| Location | 18,049,043 – 18,049,133 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 65.55 |
| Shannon entropy | 0.55628 |
| G+C content | 0.53408 |
| Mean single sequence MFE | -32.16 |
| Consensus MFE | -15.32 |
| Energy contribution | -13.96 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18049043 90 - 27905053 AACAUGGACCA------------GGACUUGGACUUGGGCUCGGA--CUUGGACUUGUGUACUGGCCAUUGUUGUGGCCACUCUUCUCUGUCCAUUUCAUCCGCC .....((((((------------((.......))))).....((--..(((((..(.....(((((((....))))))).....)...)))))..)).)))... ( -28.30, z-score = -1.12, R) >droSec1.super_0 18418264 96 - 21120651 AACAUGGACCA------GGACUUGGACUUGGACUUGGGCUCGGG--CUUGGACUUGUGUUCUGGCCAUUGUUGUGGCCACUCUUCUCUGUCCAUUUCAUCCGCC .....(((...------.((..(((((..(((...((((.((((--......)))).))))(((((((....)))))))....)))..)))))..)).)))... ( -31.30, z-score = -0.95, R) >droYak2.chr3R 18900213 102 - 28832112 AACAUGGACCAGAACUCGGACUUGGACUUGGACUUGGGCUUGGG--CAUGGACUUGUGUCCUGGCCAUUGUUGUGGCCACUCUGCUCUGUCCAUUUCAUCCGCC ................((((..((((..(((((..((((..(((--...((((....))))(((((((....)))))))))).)))).))))).)))))))).. ( -37.80, z-score = -2.12, R) >dp4.chr2 12240326 85 - 30794189 ACCCCAGAGGA------CAACUGGGACUUGGACUUGAGUUCCGAGUCCUGAUGGUUCUUUUUGGCCAUUGUUGUGGCUCUCUCUCUCUCUG------------- ....(((((((------(((..((((((.(((((((.....)))))))....))))))..)))(((((....)))))......)).)))))------------- ( -31.40, z-score = -2.41, R) >droPer1.super_0 3562250 87 + 11822988 ACCCCAGAGGA------CAACUGGGACUUGGACUUGAGUCCCGAGUCCUGAUGGUUCUUUUUGGCCAUUGUUGUGGCUCUCUCUCUGUCUUGG----------- ....(((((((------(((..((((((.(((((((.....)))))))....))))))..)))(((((....)))))..)).)))))......----------- ( -32.00, z-score = -1.89, R) >consensus AACAUGGACCA______CAACUGGGACUUGGACUUGGGCUCGGA__CCUGGACUUGUGUUCUGGCCAUUGUUGUGGCCACUCUUCUCUGUCCAUUUCAUCCGCC ....(((((.............(((.(((......))).))).......((((....)))).((((((....))))))..........)))))........... (-15.32 = -13.96 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:36 2011