| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,038,571 – 18,038,674 |
| Length | 103 |
| Max. P | 0.954912 |
| Location | 18,038,571 – 18,038,674 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 69.91 |
| Shannon entropy | 0.56257 |
| G+C content | 0.54338 |
| Mean single sequence MFE | -33.80 |
| Consensus MFE | -19.50 |
| Energy contribution | -20.70 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18038571 103 - 27905053 GAACUGAGCAGCUUGCAA---GCCCGCUGCUGGCAAGCCACUAGAUGAAACUGAACUUGUUAUUGCCU------CGGCUCCCGAUCCCGGAGAGCCACUUGAUGUUGUAACU ...((.((..((((((.(---((.....))).))))))..))))..............(((((.((.(------(((((((((....))).)))))....)).)).))))). ( -31.60, z-score = -1.97, R) >droWil1.scaffold_181130 12185143 95 - 16660200 AUAUUGUGUGGGUGAUA----CAUUACUGUUGCCAGGAGAU--GAUGUUCCCGUGUUUAAUCCUCCGGCUGC-AGAGCUGCCGCCUCCAACAAAACGAUUAU---------- ...(((((..((((...----((...((((.(((.((((..--(((.............)))))))))).))-))...)).))))..).)))).........---------- ( -23.62, z-score = -0.39, R) >droEre2.scaffold_4820 431732 106 + 10470090 GAACUGGGUAGCUGGUAAGCUGCCCGCUGCUGGCAAGCCACUGGAUGCAACUGGACUGGUCAUUGGUU------CGGCUCCCGAUCCUGGUGAGCCAAUUGGCGUUGUGACU .....((((((((....))))))))...(((....)))(((..(((((....((((..(...)..)))------)((((((((....))).))))).....))))))))... ( -40.60, z-score = -0.86, R) >droYak2.chr3R 18889783 112 - 28832112 GAACUGGGCAGCUUGUAUGCCGCCCGCUGCUGGCAUCCCACUAGAUGAAACUGGACUUGUCAUUGCUUCGGCUCCGGCUCCCGAUCCCGGCGAGCCAAUUGAUGUUGUGACU .....((((.((......)).))))((.....))......((((......))))....(((((.((....))...((((((((....))).)))))..........))))). ( -38.00, z-score = -1.16, R) >droSec1.super_0 18407979 103 - 21120651 GAACUGAGCAGCUGGCAA---GCCCGCUGCUGGCAAGCCACUAGAUGAAACUGUACUUGUUAUUGCCU------CGGCUCCCGAUCCCGGAGAGCCACUUGAUGUUGUAACU ......((((((.((...---.)).))))))(((((...((.((((......)).)).))..))))).------.((((((((....))).)))))................ ( -34.50, z-score = -2.12, R) >droSim1.chr3R 17854855 103 - 27517382 GAACUGAGCAGCUGGCAA---GCCCGCUGCUGGCAAGCCACUAGAUGAAACUGUACUUGUUAUUGCCU------CGGCUCCCGAUCCCGGAGAGCCACUUGAUGUUGUAACU ......((((((.((...---.)).))))))(((((...((.((((......)).)).))..))))).------.((((((((....))).)))))................ ( -34.50, z-score = -2.12, R) >consensus GAACUGAGCAGCUGGCAA___GCCCGCUGCUGGCAAGCCACUAGAUGAAACUGUACUUGUUAUUGCCU______CGGCUCCCGAUCCCGGAGAGCCAAUUGAUGUUGUAACU ......((((((.(((.....))).))))))(((((...((.((...........)).))..)))))........((((((((....))).)))))................ (-19.50 = -20.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:33 2011