| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,028,110 – 18,028,213 |
| Length | 103 |
| Max. P | 0.968836 |
| Location | 18,028,110 – 18,028,213 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.15 |
| Shannon entropy | 0.46456 |
| G+C content | 0.58605 |
| Mean single sequence MFE | -44.06 |
| Consensus MFE | -28.42 |
| Energy contribution | -30.50 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.968836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18028110 103 - 27905053 UUCCCACUGGCUG--GGCCUGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUU------UGGCAUCGCCCGAGUGGCUAAAAUGGCCAUGGCCGGGCGGUGCAGAGUGGU ...((((((((..--.)))......(((((((((.(.........).)))))))------))((((((((((.((((((.....))))))...))))))))))..))))). ( -48.80, z-score = -2.19, R) >droSim1.chr3R 17844464 103 - 27517382 UUCCCACUGGCUG--GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUU------UGGCAUCGCCCGAGUGGCUAAAAUGGCCACGGCCGGGUGGUGCAGAGUGGU ...(((((.((((--...))))...(((((((((.(.........).)))))))------))((((((((((.((((((.....))))))...))))))))))..))))). ( -49.80, z-score = -2.52, R) >droSec1.super_0 18397561 103 - 21120651 UUCCCACUGGCUG--GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUU------UGGCAUCGCCCGAGUGUCUAAAAUGGACACGGCCGGGUGGUGCAGAGUGGU ...(((((.((((--...))))...(((((((((.(.........).)))))))------))((((((((((.((((((.....))))))...))))))))))..))))). ( -47.70, z-score = -2.65, R) >droEre2.scaffold_4820 420975 111 + 10470090 CUUCCACUGGCUGCUGGCCUGCACACGGGGCUCCCGUUUCUGUUUCUGUGGCUUUGGCUCUGGCAUCGCCGGAGUGGCUAAAAUGGCUAUGGCCUGGUGGUGCAGAGUGGU ...((((((((.....)))(((((((.(((((.((((((..((..((.((((....((....))...)))).))..))..))))))....))))).)).))))).))))). ( -47.30, z-score = -1.24, R) >droWil1.scaffold_181130 12173559 90 - 16660200 UUUUUGGUUGCUG--GUACCGCUGAUGCUGAUGCUGAUGCCG-UGCGGUGGAUUU-----CGGCAUCGUUGAAUAUAUGUGAAUGUACGUGGCC--GUGG----------- .....(((..(..--((((.((....)).((((((((..(((-.....)))...)-----))))))).................)))))..)))--....----------- ( -26.70, z-score = -0.48, R) >consensus UUCCCACUGGCUG__GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUU______UGGCAUCGCCCGAGUGGCUAAAAUGGCCAUGGCCGGGUGGUGCAGAGUGGU ...(((((.......((((.(((.(((((((....))))).))...))))))).........((((((((((.((((((.....))))))...))))))))))..))))). (-28.42 = -30.50 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:31 2011