| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,025,764 – 18,025,823 |
| Length | 59 |
| Max. P | 0.988744 |
| Location | 18,025,764 – 18,025,823 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 92.47 |
| Shannon entropy | 0.10368 |
| G+C content | 0.58429 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -22.06 |
| Energy contribution | -21.40 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.988744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18025764 59 - 27905053 UUAGGGGGUUAAGGGGGCUUCUUAAGGGACUAGGGG---GCAUUAAGGGGCUCGGAAUCCCA ....((((((....(((((((((((.(..(....).---.).)))))))))))..)))))). ( -21.80, z-score = -2.57, R) >droSim1.chr3R 17842124 62 - 27517382 UUAGGGGGUUAAGGGGGCUUCUUAGGGGACUAGGGGGGAGCACUAAGGGGCUCGGAAUCCCA ....((((((.......((((((((....))))))))((((........))))..)))))). ( -25.00, z-score = -2.83, R) >droSec1.super_0 18395223 62 - 21120651 UUAGGGGGUUAAGGGGGCUUCUUGGGGGACUAAGGGGGAGCACUAAGGGGCUCGGAAUCCCA ....((((((.......((((((((....))))))))((((........))))..)))))). ( -25.00, z-score = -2.74, R) >consensus UUAGGGGGUUAAGGGGGCUUCUUAGGGGACUAGGGGGGAGCACUAAGGGGCUCGGAAUCCCA ....((((((....(((((((((((.................)))))))))))..)))))). (-22.06 = -21.40 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:29 2011