| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,249,066 – 8,249,138 |
| Length | 72 |
| Max. P | 0.843448 |
| Location | 8,249,066 – 8,249,138 |
|---|---|
| Length | 72 |
| Sequences | 12 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.52026 |
| G+C content | 0.52546 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -13.19 |
| Energy contribution | -12.10 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.93 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8249066 72 + 23011544 CGUGCUUGCCAGCCAUCGUGAAAGCUGGAUUGUGAUCUAAUCUCACUUUCUCCGGCGAGUAAGCACCUGGAG .((((((((..(((...(.(((((..((((((.....))))))..))))).).)))..))))))))...... ( -26.30, z-score = -2.86, R) >droSim1.chr2L 8032486 72 + 22036055 CAUGCUUUCCGGCCAUUGUGAAAGCAGGAUUAUGAUCCUGUCUGACUUUUUCAGGGAAAUAGGCUCCAGGAG .......(((((((.........(((((((....)))))))((((.....)))).......))))...))). ( -19.50, z-score = -0.42, R) >droSec1.super_3 3745754 72 + 7220098 CGUGCUUGCCAGCCAUCGUGAAAGCUGGAUUGUGAUCUAGCCUCACUUUCUCCGGCGAGUAAGCACCUGGAG .((((((((..(((...((((..(((((((....))))))).)))).......)))..))))))))...... ( -27.90, z-score = -2.81, R) >droYak2.chr2L 10884529 72 + 22324452 CGUACUUGCCAGCCAUCGUGAAAGCUGGAUUGUGAUCCAGCCUCACCUUCUCCGGCGAGUAGGCACCUGGUG (.((((((((.......((((..(((((((....))))))).)))).......)))))))).)......... ( -26.44, z-score = -2.13, R) >droEre2.scaffold_4929 17157793 72 + 26641161 CGUACUUGCCGGCCAUCGUGAAAGCUGGAUUGUGGUCCAGCCUCACUUUCUCCGGCGAGUAAGCACCUGGGG ..((((((((((.....((((..(((((((....))))))).)))).....))))))))))........... ( -32.00, z-score = -3.09, R) >droAna3.scaffold_12916 10164032 72 - 16180835 CAUGCCGUCCAGCGAACGAGAAAGCGGGAUUGUGAUCUUGCCUGACUUUUUCUGGGUGAUAGUCACCCGGAG .......(((.......(((((((((((...(....)...)))).))))))).(((((.....)))))))). ( -24.50, z-score = -1.81, R) >dp4.chr4_group3 7764267 72 - 11692001 UGUGCUUGCCUGCCAUGGAGAAUGAGGGAUUGUGGUCUUGUCUAUGUUUUUCCGGAGAGUAAGCCCCAGGGG ...((((((((.((..((((((....((((.........))))....)))))))))).))))))((....)) ( -19.20, z-score = 0.37, R) >droPer1.super_1 4872597 72 - 10282868 CGUGUUUUCCAGCCAUAGAAAAAGCGGGGUUAUGGUCUUGUCGGUUCUUUUCCGGAGAAUAAGCUCCAGGAG .((.(((((........))))).))((((((....((((..(((.......)))))))...))))))..... ( -16.10, z-score = 0.27, R) >droWil1.scaffold_180703 3440062 72 - 3946847 UGUGUUUGCCAGCCAUUGAAAAGGCAGGAUUGUGAUCUUGUCUAACCUUUUCGGGAGAGUAAGCACCUGGAG .((((((((...((...(((((((((((((....)))))).....))))))).))...))))))))...... ( -23.10, z-score = -1.96, R) >droVir3.scaffold_12963 15986145 72 + 20206255 CAUGCUUGCCAGCCAUAGUGAAUGCGGGAUUGUGAUCCUGACGGACUUUUUCAGGAGAGUAUGCUCCGGGAG ((((((..((......(((...((((((((....)))))).)).)))......))..))))))......... ( -17.60, z-score = 0.59, R) >droMoj3.scaffold_6500 5432277 72 + 32352404 CAUGCUUUCCAGCUAUGGAGAAGGCAGGAUUGUGAUCCUGACGGACUUUUUCGGGAGAGUACGCUCCAGGAG .......(((.....((((((((.((((((....)))))).....))))))))((((......)))).))). ( -22.70, z-score = -1.08, R) >droGri2.scaffold_15252 13420806 72 + 17193109 UGUGUUUGCCAGCCAUUGAAAAUGCUGGAUUGUGAUCUUGGCGAACCUUCUCAGGAGAGUAUGCUCCAGGAG ...((((((((((...(....).)))((((....)))).)))))))(((((..((((......))))))))) ( -19.00, z-score = -0.35, R) >consensus CGUGCUUGCCAGCCAUCGAGAAAGCUGGAUUGUGAUCUUGUCUGACUUUUUCCGGAGAGUAAGCACCAGGAG ..((((((((.............(((((((....)))))))............))))))))........... (-13.19 = -12.10 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:35 2011