| Sequence ID | dm3.chr2L |
|---|---|
| Location | 778,551 – 778,663 |
| Length | 112 |
| Max. P | 0.599151 |
| Location | 778,551 – 778,663 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 129 |
| Reading direction | reverse |
| Mean pairwise identity | 67.32 |
| Shannon entropy | 0.55742 |
| G+C content | 0.35496 |
| Mean single sequence MFE | -24.79 |
| Consensus MFE | -9.48 |
| Energy contribution | -9.92 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 778551 112 - 23011544 AAAUGCGCACUCGAAAGUGCACUUGAAUAAAUUCGAGCUGUGAAAAUAGAGUUAAACUA----------------GUGCAUACUU-UAUGCAAUCAACUCAGACAAUAGUUUACUCCUUAGUGCAAUUA ...(((((((((.....((((((((((....)))))).))))......))))(((((((----------------.((((((...-)))))).((......))...))))))).......))))).... ( -25.80, z-score = -1.68, R) >droSim1.chr2L 779302 97 - 22036055 AAAUGCGCACUCGAAAGUUCACUUGAAUAAAUUCGAGCUGUGAAAAUAGAGUUAAA---------------------GUGUACCC-----------AUUCACACAAUAGUUGGCUCCUUAGUGCAAUUU ...(((((.((((((.((((....))))...))))))...........(((((((.---------------------((((....-----------....)))).....)))))))....))))).... ( -23.20, z-score = -2.22, R) >droSec1.super_14 748734 97 - 2068291 AAAUGCGCACUCGAAAGUGCACUUGAAUAAAUUCGAGCUGUGAAAAUAGAGUUUAA---------------------GUGUACCU-----------AUUCACACAAUAGUUUGCUCCUUAGUGCAAUUU ...(((((........((((((((((((.........((((....)))).))))))---------------------))))))((-----------(((.....)))))...........))))).... ( -23.40, z-score = -1.97, R) >droYak2.chr2L 761301 114 - 22324452 -------------AAAGUGCACUUGAAUCAAUUCGAACUGUGAAAGUGGAGUAAAAGUAGUUUAUAUUUUAUC--CAAUCUACUUAAAAUACCAAUGCUCACACAAUAGUUUACUCCUUUGUGCAAUUU -------------....(((((..(((....)))(((((((....((((((((...(((.((((.........--.........)))).)))...))))).))).)))))))........))))).... ( -21.07, z-score = -1.37, R) >droEre2.scaffold_4929 831318 129 - 26641161 AAUUGCGCACUCGAAAGUGCACUUGAAUUAAUUCGAGCUGUGAAAAAGGCGUAAAAGUAGUAGUAAUGCUAUCAACUAUCAACUGAAAAUGCCAAUGCUCACACAAUAGUUUACUCCUCAGGGCAGUUU (((((((((((....))))).(((((........((((..(....).(((((....((((((....))))))......((....))..)))))...))))((......)).......))))))))))). ( -30.50, z-score = -1.18, R) >consensus AAAUGCGCACUCGAAAGUGCACUUGAAUAAAUUCGAGCUGUGAAAAUAGAGUUAAA_UA__________________GUCUACUU__A________ACUCACACAAUAGUUUACUCCUUAGUGCAAUUU ......(((((....((((.(((((((....))))).((((....))))...........................................................)).))))....)))))..... ( -9.48 = -9.92 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:50 2011