| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,025,487 – 18,025,599 |
| Length | 112 |
| Max. P | 0.722191 |
| Location | 18,025,487 – 18,025,599 |
|---|---|
| Length | 112 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Shannon entropy | 0.33763 |
| G+C content | 0.37827 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -17.63 |
| Energy contribution | -17.84 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.722191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18025487 112 - 27905053 ----CCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUGC-AUACACUGCGAA-- ----..................((((....)))).....(((.......)))....((((((((..(((((........)))))..))))))))..((((.((.-...)).))))..-- ( -23.20, z-score = -1.01, R) >droWil1.scaffold_181130 12171070 112 - 16660200 ----CACACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGGGAUGA-GAGCAUUGGGGA-- ----..(...((((.......(((((.............(((.......)))...(((((((((..(((((........)))))..)))))))))...))))).-...))))...).-- ( -22.40, z-score = -1.42, R) >droSim1.chr3R 17841841 110 - 27517382 ----CCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUGA-AUACACUGAG---- ----....................((((...........(((.......)))....((((((((..(((((........)))))..))))))))..........-.....)))).---- ( -20.80, z-score = -1.34, R) >droSec1.super_0 18394936 116 - 21120651 CAGACCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUGA-AUACACUGAGAA-- (((...................((((....)))).............(((......((((((((..(((((........)))))..))))))))...)))....-.....)))....-- ( -21.80, z-score = -1.46, R) >droYak2.chr3R 18876061 113 - 28832112 ----CCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUGCAAUACACUGCGAA-- ----..................((((....)))).....(((.......)))....((((((((..(((((........)))))..))))))))..((((.((.....)).))))..-- ( -23.20, z-score = -1.02, R) >droEre2.scaffold_4820 418382 112 + 10470090 ----ACCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUGC-CUACACUGCGAA-- ----..................((((....)))).....(((.......)))....((((((((..(((((........)))))..))))))))..((((.((.-...)).))))..-- ( -23.20, z-score = -1.02, R) >droAna3.scaffold_13340 9023242 118 - 23697760 CAGGCCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCAUUGGCAGCAAUGGGAUUG-CUGCACUGUGAGAA (((.((((..............((((....)))).....(((.......)))...(((((((((..(((((........)))))..))))))))).))))....-)))........... ( -26.40, z-score = -1.07, R) >droMoj3.scaffold_6540 27718218 88 - 34148556 ------UUCACAUAUACAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAAUGAUGUUAAAAGCUACAAAAUGAAGUGGAAGCUGGCGGC------------------------- ------....(((.........((((....)))).....(((.......)))..))).(((((....((((........))))....)))))..------------------------- ( -8.10, z-score = 1.17, R) >droGri2.scaffold_15074 1166290 90 - 7742996 ----CACACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCAUUGGCGGC------------------------- ----..................((((....)))).....(((.......)))....((((((((..(((((........)))))..))))))))------------------------- ( -16.60, z-score = -1.62, R) >droVir3.scaffold_13047 10773394 98 + 19223366 ----CACACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCUUUGGGAU----------------- ----..................((((....))))...............((.(((.((((((((..(((((........)))))..))))))))))).))..----------------- ( -20.50, z-score = -1.83, R) >consensus ____CCCACAAAUGAAUAAAACGUUUAGAUAAACAAAUACAGAAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAUGCAAUG__AUACACUG_GAA__ ......................((((....)))).....(((.......)))....((((((((..(((((........)))))..))))))))......................... (-17.63 = -17.84 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:28 2011