| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,024,971 – 18,025,079 |
| Length | 108 |
| Max. P | 0.578940 |
| Location | 18,024,971 – 18,025,079 |
|---|---|
| Length | 108 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.41 |
| Shannon entropy | 0.32013 |
| G+C content | 0.42639 |
| Mean single sequence MFE | -28.96 |
| Consensus MFE | -21.19 |
| Energy contribution | -20.89 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18024971 108 + 27905053 UACCUCCACACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGAG--- ...(((.(((((.((((..(((((((((((((((....))))))))))...)))))....))))......)))))((.((((..(((...)))..))))))..)))..--- ( -29.50, z-score = -1.03, R) >droPer1.super_0 3535496 87 - 11822988 ----------------UUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGCGCGAGCAUGUUCAUUGAAAUUGUGGCAA-------- ----------------.......(((((((((((....))))))))))).....(((.(..(..(((((.(((((....)))))....)))))...)..))))-------- ( -25.20, z-score = -1.78, R) >dp4.chr2 12211112 87 + 30794189 ----------------UUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGAGCAUGUUCAUUGAAAUUGUGGCAA-------- ----------------.......(((((((((((....)))))))))))......(((((((.(.........).)))))))(((.(((.......)))))).-------- ( -23.70, z-score = -1.63, R) >droAna3.scaffold_13340 9022863 105 + 23697760 CAGUGCAGCACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCCUCAACUGUGUGCGCGCAUGUUCACUGAGGUUGUGGCAGCG------ ....((((((.((..(((.....(((((((((((....)))))))))))..)))..)).))))((.(((((..(((.((....)).)))...))))).))..)).------ ( -35.10, z-score = -0.94, R) >droEre2.scaffold_4820 417862 108 - 10470090 UACCUCCUCACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGCG--- .((((........))))......(((((((((((....)))))))))))...........(((((.........(((.((((..(((...)))..)))))))))))).--- ( -29.00, z-score = -0.90, R) >droYak2.chr3R 18875457 111 + 28832112 UGCCUCCUCACAUGGGCUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGAGGAG ...((((((....((((..(((((((((((((((....))))))))))...)))))....))))..........(((.((((..(((...)))..)))))))...)))))) ( -36.40, z-score = -2.29, R) >droSec1.super_0 18394424 108 + 21120651 UACCUCCUCACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGAG--- ...(((.(((((.((((..(((((((((((((((....))))))))))...)))))....))))(((((..(..((....))..)...)))))..)))))...)))..--- ( -28.80, z-score = -1.04, R) >droSim1.chr3R 17841329 108 + 27517382 UACCUCCUCACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGAG--- ...(((.(((((.((((..(((((((((((((((....))))))))))...)))))....))))(((((..(..((....))..)...)))))..)))))...)))..--- ( -28.80, z-score = -1.04, R) >droWil1.scaffold_181130 12170870 92 + 16660200 -----------UAGCUCUUAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUUGCCG-------- -----------.(((...((((((((((((((((....))))))))))...))))))...))).(((((..(..((....))..)...)))))..........-------- ( -23.00, z-score = -0.96, R) >droVir3.scaffold_13047 10773234 95 - 19223366 ------------CUGGUUAAA-UUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGCGCGCGCAUGUUCAUUGAAUUUGUUGCAAGCCAG--- ------------((((((...-.....(((((((....)))))))((((((((((((..((......(((((((....)))).))))).)))))))))))).))))))--- ( -30.10, z-score = -2.15, R) >consensus UACCUCC_CACAUGGGUUAAAAUUUAUGCGCUGUUCAAACGGCGCGUAAUAAAUUUGUUUGCUCUUCAACUGUGUGCGCGCAUGUUCAUUGAAAUUGUGGCAAGAGAG___ .......................(((((((((((....))))))))))).....(((.(..(..(((((.(((((....)))))....)))))...)..))))........ (-21.19 = -20.89 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:27 2011